miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11560 3' -60.4 NC_003085.1 + 3091 0.66 0.458274
Target:  5'- uGCaC-CGUCUGGGCgUCGUCCgUGcGCCCa -3'
miRNA:   3'- -CG-GcGCGGGUCUGaAGCAGG-AC-CGGG- -5'
11560 3' -60.4 NC_003085.1 + 764 0.66 0.448712
Target:  5'- gGCCGCGCCCgAGGCcggacgCGggaCaggUGGCCg -3'
miRNA:   3'- -CGGCGCGGG-UCUGaa----GCa--Gg--ACCGGg -5'
11560 3' -60.4 NC_003085.1 + 41285 0.66 0.448712
Target:  5'- uGCacaGCGCCCAGcggcuCUUCGacgaCCUcacGCCCa -3'
miRNA:   3'- -CGg--CGCGGGUCu----GAAGCa---GGAc--CGGG- -5'
11560 3' -60.4 NC_003085.1 + 662 0.66 0.448712
Target:  5'- aGCaC-CGCCCGGACgUCG-CC-GGCCa -3'
miRNA:   3'- -CG-GcGCGGGUCUGaAGCaGGaCCGGg -5'
11560 3' -60.4 NC_003085.1 + 27921 0.66 0.439262
Target:  5'- gGCCGCGCgugguuccgguaCCGGACUugcccaucuacUCGUCCgcgguguggGGCg- -3'
miRNA:   3'- -CGGCGCG------------GGUCUGA-----------AGCAGGa--------CCGgg -5'
11560 3' -60.4 NC_003085.1 + 27871 0.66 0.430855
Target:  5'- uGCCGaCGuacCCCGGGCagcccaccgagcaacUCGUCaUGGCCCu -3'
miRNA:   3'- -CGGC-GC---GGGUCUGa--------------AGCAGgACCGGG- -5'
11560 3' -60.4 NC_003085.1 + 30377 0.66 0.429926
Target:  5'- uCC-CGCCCGGGCcaUCGgugCCUGGgCUg -3'
miRNA:   3'- cGGcGCGGGUCUGa-AGCa--GGACCgGG- -5'
11560 3' -60.4 NC_003085.1 + 30557 0.66 0.420708
Target:  5'- cGUCGaGUCCAGGCgucgCGUCCaGGUCg -3'
miRNA:   3'- -CGGCgCGGGUCUGaa--GCAGGaCCGGg -5'
11560 3' -60.4 NC_003085.1 + 13937 0.66 0.418879
Target:  5'- gGCgCGCGCCgaAGAagaagcggagCGUCggaCUGGCCCg -3'
miRNA:   3'- -CG-GCGCGGg-UCUgaa-------GCAG---GACCGGG- -5'
11560 3' -60.4 NC_003085.1 + 44947 0.66 0.411611
Target:  5'- aGCCGgGCUCAaACgccUCGU--UGGCCCa -3'
miRNA:   3'- -CGGCgCGGGUcUGa--AGCAggACCGGG- -5'
11560 3' -60.4 NC_003085.1 + 17528 0.66 0.410707
Target:  5'- cGCCaguacgaGCGCCgGGAC-UCG-CCaUGGUCCc -3'
miRNA:   3'- -CGG-------CGCGGgUCUGaAGCaGG-ACCGGG- -5'
11560 3' -60.4 NC_003085.1 + 3168 0.67 0.402636
Target:  5'- uCCGCGCgcacagCCAGAaguagcCGUCCUcucgcgGGCCCu -3'
miRNA:   3'- cGGCGCG------GGUCUgaa---GCAGGA------CCGGG- -5'
11560 3' -60.4 NC_003085.1 + 2149 0.67 0.402636
Target:  5'- gGCUGCGCUCGucGCgucacCGUCCgGGCCUu -3'
miRNA:   3'- -CGGCGCGGGUc-UGaa---GCAGGaCCGGG- -5'
11560 3' -60.4 NC_003085.1 + 18991 0.67 0.385063
Target:  5'- cGCCuuCGUCCGGuGCaUCGUCg-GGCCCg -3'
miRNA:   3'- -CGGc-GCGGGUC-UGaAGCAGgaCCGGG- -5'
11560 3' -60.4 NC_003085.1 + 35097 0.67 0.385063
Target:  5'- uCCGCGCagCCAGccgcugGCUUCuGUCCUaauGGCCg -3'
miRNA:   3'- cGGCGCG--GGUC------UGAAG-CAGGA---CCGGg -5'
11560 3' -60.4 NC_003085.1 + 26165 0.67 0.385063
Target:  5'- aGCCGUGuCCCAGGCcaugCGUCaCcGuGCCUu -3'
miRNA:   3'- -CGGCGC-GGGUCUGaa--GCAG-GaC-CGGG- -5'
11560 3' -60.4 NC_003085.1 + 31622 0.67 0.37647
Target:  5'- gGCCGCGgggCCuGAagUCGUgCCUGaGCCCa -3'
miRNA:   3'- -CGGCGCg--GGuCUgaAGCA-GGAC-CGGG- -5'
11560 3' -60.4 NC_003085.1 + 22426 0.67 0.368006
Target:  5'- aGCgGCGCCuCAcGGCaUCccuccauUCCUGGCCUg -3'
miRNA:   3'- -CGgCGCGG-GU-CUGaAGc------AGGACCGGG- -5'
11560 3' -60.4 NC_003085.1 + 24841 0.67 0.359674
Target:  5'- cGCCGagGCgCAGAUUcUCG-CCUGGgCCg -3'
miRNA:   3'- -CGGCg-CGgGUCUGA-AGCaGGACCgGG- -5'
11560 3' -60.4 NC_003085.1 + 19080 0.67 0.359674
Target:  5'- cGCCGgGCCCGGACggagugCG-CCgcaCCCg -3'
miRNA:   3'- -CGGCgCGGGUCUGaa----GCaGGaccGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.