miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 3' -54.6 NC_003085.1 + 41222 0.66 0.75141
Target:  5'- -aGcCGUUGGAGGCauccggccagcaGUACGggGUGCc -3'
miRNA:   3'- ggCuGUAGCCUUCGg-----------CGUGCuuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 3179 0.66 0.743101
Target:  5'- gUCGAgCAUCGccucAAGCCGCGCcuuccgcgGGAGCGg -3'
miRNA:   3'- -GGCU-GUAGCc---UUCGGCGUG--------CUUCGCg -5'
11561 3' -54.6 NC_003085.1 + 38598 0.66 0.743101
Target:  5'- gCCGGgGUUGGu-GUugCGCAUGAAuGCGCu -3'
miRNA:   3'- -GGCUgUAGCCuuCG--GCGUGCUU-CGCG- -5'
11561 3' -54.6 NC_003085.1 + 43219 0.66 0.743101
Target:  5'- gCCGAg--CGGGAaCCGCGCagcauGGGCGCg -3'
miRNA:   3'- -GGCUguaGCCUUcGGCGUGc----UUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 36831 0.66 0.743101
Target:  5'- gCCGACGgc-GAGGCCG-GCGGccgaggggagguAGCGCa -3'
miRNA:   3'- -GGCUGUagcCUUCGGCgUGCU------------UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 39979 0.66 0.743101
Target:  5'- gCCGACGcUGGGcuuCUGCAUGggGUGUc -3'
miRNA:   3'- -GGCUGUaGCCUuc-GGCGUGCuuCGCG- -5'
11561 3' -54.6 NC_003085.1 + 17053 0.66 0.743101
Target:  5'- gUCGGCGUCGcGGGCC---CGGAGCGUc -3'
miRNA:   3'- -GGCUGUAGCcUUCGGcguGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 33790 0.66 0.743101
Target:  5'- cCCGACAgagaGGAGGaguucuCCuCGCGggGCaGCa -3'
miRNA:   3'- -GGCUGUag--CCUUC------GGcGUGCuuCG-CG- -5'
11561 3' -54.6 NC_003085.1 + 7903 0.66 0.743101
Target:  5'- gUGGCGUCGG-GGCgaGCGCGuccugucGGCGUg -3'
miRNA:   3'- gGCUGUAGCCuUCGg-CGUGCu------UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 40778 0.66 0.743101
Target:  5'- gCUGACGUUGGcGGaCgGCACcccGGCGCc -3'
miRNA:   3'- -GGCUGUAGCCuUC-GgCGUGcu-UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 370 0.66 0.743101
Target:  5'- gCCGACAaCGGGaggGGCCaGUaccucuACGGcaAGCGCc -3'
miRNA:   3'- -GGCUGUaGCCU---UCGG-CG------UGCU--UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 42166 0.66 0.742058
Target:  5'- -gGACAU-GGAcucucccgucgcAGCCagccucgGCAUGAGGCGCu -3'
miRNA:   3'- ggCUGUAgCCU------------UCGG-------CGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 38620 0.66 0.742058
Target:  5'- gCCGugcuCGUCGGGacgcucaAGCCGCugGGguuuGcCGCc -3'
miRNA:   3'- -GGCu---GUAGCCU-------UCGGCGugCUu---C-GCG- -5'
11561 3' -54.6 NC_003085.1 + 14128 0.66 0.739967
Target:  5'- aCGGCAUcaccgugcugcccgCGGuguacCCGUACGGAGUGCc -3'
miRNA:   3'- gGCUGUA--------------GCCuuc--GGCGUGCUUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 34797 0.66 0.736823
Target:  5'- aCGACGagcgguucagugggCGGGAGCCuucgGCGCuGAccgAGCGCg -3'
miRNA:   3'- gGCUGUa-------------GCCUUCGG----CGUG-CU---UCGCG- -5'
11561 3' -54.6 NC_003085.1 + 20005 0.66 0.732616
Target:  5'- gCCGuCGUCGuGggGCCGCAacucagccugGAGGacgGCa -3'
miRNA:   3'- -GGCuGUAGC-CuuCGGCGUg---------CUUCg--CG- -5'
11561 3' -54.6 NC_003085.1 + 11770 0.66 0.732616
Target:  5'- aCGACGguacggCGGc-GCCGCGCuccGGGCGUg -3'
miRNA:   3'- gGCUGUa-----GCCuuCGGCGUGc--UUCGCG- -5'
11561 3' -54.6 NC_003085.1 + 10575 0.66 0.732616
Target:  5'- gCGAaggagCGGgcGCaGCACGAGGCaGCc -3'
miRNA:   3'- gGCUgua--GCCuuCGgCGUGCUUCG-CG- -5'
11561 3' -54.6 NC_003085.1 + 6747 0.66 0.732616
Target:  5'- uCCGACugccCGGccuGCCGCGCcguGGCGg -3'
miRNA:   3'- -GGCUGua--GCCuu-CGGCGUGcu-UCGCg -5'
11561 3' -54.6 NC_003085.1 + 43516 0.67 0.72203
Target:  5'- cCCGGCGUggaCGGGaacggcgccgaaGGCgGCGCGuccagcuuGCGCg -3'
miRNA:   3'- -GGCUGUA---GCCU------------UCGgCGUGCuu------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.