miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 5' -57.6 NC_003085.1 + 48860 0.67 0.473414
Target:  5'- -cGUAGGCCGcgACGGgCUUGCaguCGccGCa -3'
miRNA:   3'- uaCGUCCGGU--UGCCgGAACG---GCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 22194 0.67 0.473414
Target:  5'- gGUGCAGGCCGAgGuGCag-GgCGAccUGCu -3'
miRNA:   3'- -UACGUCCGGUUgC-CGgaaCgGCU--ACG- -5'
11561 5' -57.6 NC_003085.1 + 44330 0.67 0.470355
Target:  5'- -gGCAGGCCGaguccgagcgcgacGCGGCCcgGCagGAaGCg -3'
miRNA:   3'- uaCGUCCGGU--------------UGCCGGaaCGg-CUaCG- -5'
11561 5' -57.6 NC_003085.1 + 41391 0.67 0.463258
Target:  5'- gGUGguGGgUGACGGCCgugUUGUCGGaGCc -3'
miRNA:   3'- -UACguCCgGUUGCCGG---AACGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 18531 0.67 0.453216
Target:  5'- uGUGCGGGCCGAUuGCCcagaaGCaCGAggugGCg -3'
miRNA:   3'- -UACGUCCGGUUGcCGGaa---CG-GCUa---CG- -5'
11561 5' -57.6 NC_003085.1 + 22141 0.67 0.437401
Target:  5'- -cGCGGcGgCGAUGGCCUUGUCcaacacgccuucgauGGUGCu -3'
miRNA:   3'- uaCGUC-CgGUUGCCGGAACGG---------------CUACG- -5'
11561 5' -57.6 NC_003085.1 + 8950 0.67 0.433497
Target:  5'- -cGCAuGCCAgacGCGGUgaCguggaUGCCGAUGCa -3'
miRNA:   3'- uaCGUcCGGU---UGCCG--Ga----ACGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 1707 0.67 0.433497
Target:  5'- -gGCAGGCCAugACuacGCCUccucuguguggcUGCCG-UGCg -3'
miRNA:   3'- uaCGUCCGGU--UGc--CGGA------------ACGGCuACG- -5'
11561 5' -57.6 NC_003085.1 + 3803 0.67 0.433497
Target:  5'- --uCAGGCgGACGGUCaUGCUGAcGCc -3'
miRNA:   3'- uacGUCCGgUUGCCGGaACGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 49241 0.67 0.433497
Target:  5'- -gGCAGGaCCgGGCGGCCUccgaccucaUGgaGAUGCu -3'
miRNA:   3'- uaCGUCC-GG-UUGCCGGA---------ACggCUACG- -5'
11561 5' -57.6 NC_003085.1 + 15347 0.67 0.433497
Target:  5'- -cGCGGGCgCGGCGGgUgagcucgGCCGcgGCc -3'
miRNA:   3'- uaCGUCCG-GUUGCCgGaa-----CGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 35309 0.67 0.433497
Target:  5'- -aGCAGGUCGcgGCGGCU--GUCGGUGa -3'
miRNA:   3'- uaCGUCCGGU--UGCCGGaaCGGCUACg -5'
11561 5' -57.6 NC_003085.1 + 3200 0.67 0.423827
Target:  5'- -cGCGGGCCc-UGGCCcgaUGCCGcaagGCg -3'
miRNA:   3'- uaCGUCCGGuuGCCGGa--ACGGCua--CG- -5'
11561 5' -57.6 NC_003085.1 + 36825 0.67 0.423827
Target:  5'- -gGCgAGGCCGGCGGCCgaggGgaGGUaGCg -3'
miRNA:   3'- uaCG-UCCGGUUGCCGGaa--CggCUA-CG- -5'
11561 5' -57.6 NC_003085.1 + 6166 0.67 0.422866
Target:  5'- cAUGCAGG-CGACGGaggacucCCUggggccGCUGGUGCa -3'
miRNA:   3'- -UACGUCCgGUUGCC-------GGAa-----CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 19976 0.68 0.414286
Target:  5'- -aGCAguuccuGGCCAaguACGGCCcUGCCGccGUc -3'
miRNA:   3'- uaCGU------CCGGU---UGCCGGaACGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 30003 0.68 0.414286
Target:  5'- -aGC-GGCCcugGGCGGCCUUGgCGAcGUc -3'
miRNA:   3'- uaCGuCCGG---UUGCCGGAACgGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 8946 0.68 0.404878
Target:  5'- -cGCGuGGCCAACcugcgcugGGCCaaggGCCGcgGCc -3'
miRNA:   3'- uaCGU-CCGGUUG--------CCGGaa--CGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 43560 0.68 0.404878
Target:  5'- cUGgAGGCgGugGGCCguuUGUCGAgugggUGCg -3'
miRNA:   3'- uACgUCCGgUugCCGGa--ACGGCU-----ACG- -5'
11561 5' -57.6 NC_003085.1 + 34929 0.68 0.395607
Target:  5'- gGUGCAGGCgCAcGCGGCggagUUGCUGGccgGCg -3'
miRNA:   3'- -UACGUCCG-GU-UGCCGg---AACGGCUa--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.