miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11562 3' -64 NC_003085.1 + 23313 0.66 0.283716
Target:  5'- gGCGG-CGCgGUGCgaaGCGCgGCgGCCg -3'
miRNA:   3'- -UGCCgGCGgCGCGaagCGUGgCG-CGG- -5'
11562 3' -64 NC_003085.1 + 10482 0.66 0.279669
Target:  5'- cUGGCCgaccuGCUGCGCggCGCACUggagaauccgcggaaGCGCa -3'
miRNA:   3'- uGCCGG-----CGGCGCGaaGCGUGG---------------CGCGg -5'
11562 3' -64 NC_003085.1 + 23955 0.66 0.276998
Target:  5'- gACGGCUGCUGCcgUUCGCucaCGCcCCg -3'
miRNA:   3'- -UGCCGGCGGCGcgAAGCGug-GCGcGG- -5'
11562 3' -64 NC_003085.1 + 47006 0.66 0.276998
Target:  5'- uCGGCCcCUGCGCg-CGCcgaACCuGUGCCg -3'
miRNA:   3'- uGCCGGcGGCGCGaaGCG---UGG-CGCGG- -5'
11562 3' -64 NC_003085.1 + 28856 0.66 0.276998
Target:  5'- cCGcGCCGCC-CGaCUUcCGCGgCGCuGCCg -3'
miRNA:   3'- uGC-CGGCGGcGC-GAA-GCGUgGCG-CGG- -5'
11562 3' -64 NC_003085.1 + 8484 0.66 0.276998
Target:  5'- -aGGCCGCCgagGCGCUggccCGCcaguacgaCGCGCa -3'
miRNA:   3'- ugCCGGCGG---CGCGAa---GCGug------GCGCGg -5'
11562 3' -64 NC_003085.1 + 20289 0.66 0.276998
Target:  5'- gGCGaaGCCcaagGCCGUGCccaaCGCGCC-CGCCa -3'
miRNA:   3'- -UGC--CGG----CGGCGCGaa--GCGUGGcGCGG- -5'
11562 3' -64 NC_003085.1 + 19993 0.66 0.276998
Target:  5'- uACGGCCcuGCCGcCGUcgUCGUgggGCCGCaacucaGCCu -3'
miRNA:   3'- -UGCCGG--CGGC-GCGa-AGCG---UGGCG------CGG- -5'
11562 3' -64 NC_003085.1 + 47524 0.66 0.275007
Target:  5'- uACGGCCaccgggaccgacgaGCC-CGCgagcgaugCGCAgCGCGCUg -3'
miRNA:   3'- -UGCCGG--------------CGGcGCGaa------GCGUgGCGCGG- -5'
11562 3' -64 NC_003085.1 + 44381 0.66 0.270407
Target:  5'- cACuGUCGCuCGgGCUguUCGUcaucCCGCGCCg -3'
miRNA:   3'- -UGcCGGCG-GCgCGA--AGCGu---GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 39594 0.66 0.270407
Target:  5'- aACGGCCaggacgauGCCaGCGaCgaggCGCACCggcuuccgaGCGCCu -3'
miRNA:   3'- -UGCCGG--------CGG-CGC-Gaa--GCGUGG---------CGCGG- -5'
11562 3' -64 NC_003085.1 + 37048 0.66 0.270407
Target:  5'- cCGGCCuguaCCGCGCUg-GCGCCGaCGaCg -3'
miRNA:   3'- uGCCGGc---GGCGCGAagCGUGGC-GCgG- -5'
11562 3' -64 NC_003085.1 + 27708 0.66 0.270407
Target:  5'- gGCGuCCGCC-CGCUgUCGCGCCuCGUUg -3'
miRNA:   3'- -UGCcGGCGGcGCGA-AGCGUGGcGCGG- -5'
11562 3' -64 NC_003085.1 + 3796 0.66 0.270407
Target:  5'- gACGGUcaugcugaCGCCucGCGUggcacgUCGCGCUGCGUg -3'
miRNA:   3'- -UGCCG--------GCGG--CGCGa-----AGCGUGGCGCGg -5'
11562 3' -64 NC_003085.1 + 6756 0.66 0.270407
Target:  5'- cCGGCCuGCCGCGCcguggCGgACgGCgagaGCCc -3'
miRNA:   3'- uGCCGG-CGGCGCGaa---GCgUGgCG----CGG- -5'
11562 3' -64 NC_003085.1 + 14877 0.66 0.269755
Target:  5'- gAUGGCC-UCGCGgaggaugucggccUUUUGCAccCCGCGCCg -3'
miRNA:   3'- -UGCCGGcGGCGC-------------GAAGCGU--GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 15467 0.67 0.263943
Target:  5'- uCGGCUGCUGaCGCUcgUCcucacgcuccuGCAuCCGCGUCu -3'
miRNA:   3'- uGCCGGCGGC-GCGA--AG-----------CGU-GGCGCGG- -5'
11562 3' -64 NC_003085.1 + 41207 0.67 0.263304
Target:  5'- cCGGCCagcaguacgggguGCCGCGCUcgGC-CUGgGCCu -3'
miRNA:   3'- uGCCGG-------------CGGCGCGAagCGuGGCgCGG- -5'
11562 3' -64 NC_003085.1 + 6009 0.67 0.257606
Target:  5'- uACGGCUGg-GCGCggauguaCGCccggacGCCGCGCCa -3'
miRNA:   3'- -UGCCGGCggCGCGaa-----GCG------UGGCGCGG- -5'
11562 3' -64 NC_003085.1 + 47592 0.67 0.257606
Target:  5'- -gGGCCGaugaGCGCaagaCGgaGCCGCGCCu -3'
miRNA:   3'- ugCCGGCgg--CGCGaa--GCg-UGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.