miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11562 5' -55.9 NC_003085.1 + 23894 0.66 0.632665
Target:  5'- -cGGCaGCAGC-CGUCcacGCGCAgaaAGUCGc -3'
miRNA:   3'- uuCCG-CGUCGaGCAG---CGCGU---UUAGCa -5'
11562 5' -55.9 NC_003085.1 + 46380 0.66 0.631542
Target:  5'- -cGGCcuGCGGCUCGUCacgcuguGCGCGGugacAUCGc -3'
miRNA:   3'- uuCCG--CGUCGAGCAG-------CGCGUU----UAGCa -5'
11562 5' -55.9 NC_003085.1 + 720 0.66 0.621438
Target:  5'- cGGGCGguGCUCGa-GCGCc--UCGa -3'
miRNA:   3'- uUCCGCguCGAGCagCGCGuuuAGCa -5'
11562 5' -55.9 NC_003085.1 + 26089 0.66 0.621438
Target:  5'- -uGGCGCAGC--GUCGC-CAAuUCGUu -3'
miRNA:   3'- uuCCGCGUCGagCAGCGcGUUuAGCA- -5'
11562 5' -55.9 NC_003085.1 + 12093 0.66 0.599023
Target:  5'- -cGGgGCGGgUgaCG-CGCGCAAGUCGg -3'
miRNA:   3'- uuCCgCGUCgA--GCaGCGCGUUUAGCa -5'
11562 5' -55.9 NC_003085.1 + 42269 0.67 0.565643
Target:  5'- cAGGGCGCGGaUUCGuuguuccaguUCGCGCAcGUCc- -3'
miRNA:   3'- -UUCCGCGUC-GAGC----------AGCGCGUuUAGca -5'
11562 5' -55.9 NC_003085.1 + 16561 0.67 0.554617
Target:  5'- -cGGCGCcgucAGCgacgggaaggCGgCGCGCAGGUCGg -3'
miRNA:   3'- uuCCGCG----UCGa---------GCaGCGCGUUUAGCa -5'
11562 5' -55.9 NC_003085.1 + 13909 0.67 0.543655
Target:  5'- -cGGUGCGGCgUG-CGCGCGuuUCGg -3'
miRNA:   3'- uuCCGCGUCGaGCaGCGCGUuuAGCa -5'
11562 5' -55.9 NC_003085.1 + 28470 0.67 0.543655
Target:  5'- uGAGGCGCucaccGGCUgCGUgcugaCGCGCAAcgCGc -3'
miRNA:   3'- -UUCCGCG-----UCGA-GCA-----GCGCGUUuaGCa -5'
11562 5' -55.9 NC_003085.1 + 47735 0.67 0.543655
Target:  5'- cGGGCGCGGUgcgCGUagCGuCGCAAuUCGa -3'
miRNA:   3'- uUCCGCGUCGa--GCA--GC-GCGUUuAGCa -5'
11562 5' -55.9 NC_003085.1 + 620 0.67 0.521954
Target:  5'- uGGGCGC-GCUCGaggcUgGCGCGGAccUCGUc -3'
miRNA:   3'- uUCCGCGuCGAGC----AgCGCGUUU--AGCA- -5'
11562 5' -55.9 NC_003085.1 + 39688 0.67 0.518727
Target:  5'- cAGGCGCuggaGGCUCGUCucuccgccguugagGCGCAGcgCa- -3'
miRNA:   3'- uUCCGCG----UCGAGCAG--------------CGCGUUuaGca -5'
11562 5' -55.9 NC_003085.1 + 23554 0.67 0.511229
Target:  5'- cAGGGCGCuGCUCGgCGCgGCGuugCGa -3'
miRNA:   3'- -UUCCGCGuCGAGCaGCG-CGUuuaGCa -5'
11562 5' -55.9 NC_003085.1 + 9153 0.67 0.50803
Target:  5'- -uGGCGgAGCUCGccgcCGCGCAGuccugagucuguggGUCGg -3'
miRNA:   3'- uuCCGCgUCGAGCa---GCGCGUU--------------UAGCa -5'
11562 5' -55.9 NC_003085.1 + 2160 0.68 0.500597
Target:  5'- cGAGGUGCGgcggcugcGCUCGUCGCGUcac-CGUc -3'
miRNA:   3'- -UUCCGCGU--------CGAGCAGCGCGuuuaGCA- -5'
11562 5' -55.9 NC_003085.1 + 32139 0.69 0.449025
Target:  5'- cGGGgGCGGCUgGUgGCGCGGuggguuacggcGUCGg -3'
miRNA:   3'- uUCCgCGUCGAgCAgCGCGUU-----------UAGCa -5'
11562 5' -55.9 NC_003085.1 + 2359 0.69 0.409956
Target:  5'- gGAGGCGCAGUgcgaggccgCGgCGCGCGAGcucUCGc -3'
miRNA:   3'- -UUCCGCGUCGa--------GCaGCGCGUUU---AGCa -5'
11562 5' -55.9 NC_003085.1 + 48454 0.69 0.407112
Target:  5'- -cGGCGCuGCUCGcCGCGCucaggagcgcgcguGAGUCa- -3'
miRNA:   3'- uuCCGCGuCGAGCaGCGCG--------------UUUAGca -5'
11562 5' -55.9 NC_003085.1 + 3103 0.7 0.391231
Target:  5'- gAAGGCGCGGCUUGagGCGaugcUCGa -3'
miRNA:   3'- -UUCCGCGUCGAGCagCGCguuuAGCa -5'
11562 5' -55.9 NC_003085.1 + 39571 0.7 0.39031
Target:  5'- cGAGGCGCAccggcuuccgagcGcCUCGaCGCGCAcGUCGg -3'
miRNA:   3'- -UUCCGCGU-------------C-GAGCaGCGCGUuUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.