miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 3' -65.3 NC_003085.1 + 1652 0.66 0.249221
Target:  5'- cGGCac-GCGUaCGCCGcGCCGCacuGcAGGCg -3'
miRNA:   3'- -CCGguuCGCG-GCGGC-CGGCGg--C-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 667 0.66 0.249221
Target:  5'- cGCCcGGaCGUCGCCGGCCaccugucCCGcguccggccucGGGCg -3'
miRNA:   3'- cCGGuUC-GCGGCGGCCGGc------GGC-----------UCCG- -5'
11563 3' -65.3 NC_003085.1 + 26978 0.66 0.249221
Target:  5'- cGGCCu-GCGCaGCCGGCUGggcuaCCGcgaguggugcacGGGCc -3'
miRNA:   3'- -CCGGuuCGCGgCGGCCGGC-----GGC------------UCCG- -5'
11563 3' -65.3 NC_003085.1 + 40223 0.66 0.249221
Target:  5'- uGGCCcu-CGCCauugguggcggGCUcuucGCCGCCGGGGCc -3'
miRNA:   3'- -CCGGuucGCGG-----------CGGc---CGGCGGCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 38107 0.66 0.248617
Target:  5'- cGCCAccaucgucucggaGGUGCCGUgaGGCuCGCCGcccugcuGGCg -3'
miRNA:   3'- cCGGU-------------UCGCGGCGg-CCG-GCGGCu------CCG- -5'
11563 3' -65.3 NC_003085.1 + 25453 0.66 0.248617
Target:  5'- cGGCCGGuuucuGgGUgGUCGGCCGCCGcucuucuucacccAGGg -3'
miRNA:   3'- -CCGGUU-----CgCGgCGGCCGGCGGC-------------UCCg -5'
11563 3' -65.3 NC_003085.1 + 47849 0.66 0.247411
Target:  5'- uGGCCGAagcacaagucgccuGCGagCGCCuGGCCGUCGAauuGCg -3'
miRNA:   3'- -CCGGUU--------------CGCg-GCGG-CCGGCGGCUc--CG- -5'
11563 3' -65.3 NC_003085.1 + 30591 0.66 0.245611
Target:  5'- -uCCAcGCGCCGCCuccuguccugcaucuGGCUGUCGucgaguccAGGCg -3'
miRNA:   3'- ccGGUuCGCGGCGG---------------CCGGCGGC--------UCCG- -5'
11563 3' -65.3 NC_003085.1 + 37195 0.66 0.245013
Target:  5'- cGGCCAguuucacGGCGCCaGCggccuucaauucuggCGGCCcaGCCGccgcgcucaAGGCa -3'
miRNA:   3'- -CCGGU-------UCGCGG-CG---------------GCCGG--CGGC---------UCCG- -5'
11563 3' -65.3 NC_003085.1 + 23027 0.66 0.243228
Target:  5'- gGGCCGgcucguccGGCuuCGCCGucGCCGUCGAcgcGGCc -3'
miRNA:   3'- -CCGGU--------UCGcgGCGGC--CGGCGGCU---CCG- -5'
11563 3' -65.3 NC_003085.1 + 19604 0.66 0.243228
Target:  5'- cGUCGGGCGCCGUCcgcugGGCUGCuCGAaaaGCu -3'
miRNA:   3'- cCGGUUCGCGGCGG-----CCGGCG-GCUc--CG- -5'
11563 3' -65.3 NC_003085.1 + 10754 0.66 0.243228
Target:  5'- cGGCCAcacgGGCGCCG--GGaagaCGCUGGGGg -3'
miRNA:   3'- -CCGGU----UCGCGGCggCCg---GCGGCUCCg -5'
11563 3' -65.3 NC_003085.1 + 48276 0.66 0.243228
Target:  5'- uGGUCAauGGuCGCC-CCGGCagCGUCGuAGGCc -3'
miRNA:   3'- -CCGGU--UC-GCGGcGGCCG--GCGGC-UCCG- -5'
11563 3' -65.3 NC_003085.1 + 6757 0.66 0.243228
Target:  5'- cGGCCugccGCGCCGUggCGGaCGgCGAGaGCc -3'
miRNA:   3'- -CCGGuu--CGCGGCG--GCCgGCgGCUC-CG- -5'
11563 3' -65.3 NC_003085.1 + 29187 0.66 0.243228
Target:  5'- uGGC--AGCGCCGCgaGGaCGCgGAGcGCa -3'
miRNA:   3'- -CCGguUCGCGGCGg-CCgGCGgCUC-CG- -5'
11563 3' -65.3 NC_003085.1 + 43101 0.66 0.243228
Target:  5'- cGGCCGccAGCaGCaCGCCGGgaacaGCCuuGGCg -3'
miRNA:   3'- -CCGGU--UCG-CG-GCGGCCgg---CGGcuCCG- -5'
11563 3' -65.3 NC_003085.1 + 39174 0.66 0.242635
Target:  5'- cGGCCAggacugcggcgggAGCGuuGCCua-UGCgGAGGCu -3'
miRNA:   3'- -CCGGU-------------UCGCggCGGccgGCGgCUCCG- -5'
11563 3' -65.3 NC_003085.1 + 38264 0.66 0.23969
Target:  5'- cGcCCGAGuUGCCGCCaGCCcaggggaacaccugcGCCGcGGCg -3'
miRNA:   3'- cC-GGUUC-GCGGCGGcCGG---------------CGGCuCCG- -5'
11563 3' -65.3 NC_003085.1 + 7349 0.66 0.237355
Target:  5'- gGGCUAcacGCGCCcCUGGgCGCCgcuccaguacGAGGCc -3'
miRNA:   3'- -CCGGUu--CGCGGcGGCCgGCGG----------CUCCG- -5'
11563 3' -65.3 NC_003085.1 + 5559 0.66 0.237355
Target:  5'- gGGCCuGGCGCCGCgaaCGGUgcgccacgucuaCGCCcuGGUg -3'
miRNA:   3'- -CCGGuUCGCGGCG---GCCG------------GCGGcuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.