miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11563 5' -52.8 NC_003085.1 + 28112 0.67 0.792817
Target:  5'- gGCGCU-CGGCUCCGACaggagGACgCCgUCCa -3'
miRNA:   3'- -CGUGAaGCUGGGGUUGg----UUGaGG-AGG- -5'
11563 5' -52.8 NC_003085.1 + 32248 0.67 0.782814
Target:  5'- cGUGCUcaccagCGGCgCUGACCAACU-CUCCa -3'
miRNA:   3'- -CGUGAa-----GCUGgGGUUGGUUGAgGAGG- -5'
11563 5' -52.8 NC_003085.1 + 36984 0.67 0.762334
Target:  5'- cCGCUUCGACUCCAgcagggcacuGCUGGCgCC-CCa -3'
miRNA:   3'- cGUGAAGCUGGGGU----------UGGUUGaGGaGG- -5'
11563 5' -52.8 NC_003085.1 + 20879 0.67 0.762334
Target:  5'- -gGCgUCcACCCCGGCaacCUCCUCCc -3'
miRNA:   3'- cgUGaAGcUGGGGUUGguuGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 3021 0.67 0.762334
Target:  5'- cGCGCUU-GACgCCGuCCuGgUCCUCCu -3'
miRNA:   3'- -CGUGAAgCUGgGGUuGGuUgAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 19150 0.67 0.751881
Target:  5'- cGCACUccgucCGGgCCCGgcGCCuGCUCCgCCg -3'
miRNA:   3'- -CGUGAa----GCUgGGGU--UGGuUGAGGaGG- -5'
11563 5' -52.8 NC_003085.1 + 21885 0.68 0.741301
Target:  5'- aGCuCggCGGCCUUGggcGCCAACUCCUUg -3'
miRNA:   3'- -CGuGaaGCUGGGGU---UGGUUGAGGAGg -5'
11563 5' -52.8 NC_003085.1 + 22338 0.68 0.741301
Target:  5'- cGCACguuccacUCGGCCUgcuGCCG-CUCCUUCg -3'
miRNA:   3'- -CGUGa------AGCUGGGgu-UGGUuGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 39102 0.68 0.708929
Target:  5'- aGCGCU-CG-CCCaCGcauGCCGucgcCUCCUCCg -3'
miRNA:   3'- -CGUGAaGCuGGG-GU---UGGUu---GAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 45571 0.69 0.686939
Target:  5'- cGCGCagcgCGGCCUCAAUgcgcugCAACUCCgCCu -3'
miRNA:   3'- -CGUGaa--GCUGGGGUUG------GUUGAGGaGG- -5'
11563 5' -52.8 NC_003085.1 + 22740 0.69 0.686939
Target:  5'- aGCACU-CGGCUCCGacacccgcGCCGACgacgCCcgCCg -3'
miRNA:   3'- -CGUGAaGCUGGGGU--------UGGUUGa---GGa-GG- -5'
11563 5' -52.8 NC_003085.1 + 2931 0.69 0.686939
Target:  5'- uGCGCUUCaGCaUC-AUCGGCUCCUCCc -3'
miRNA:   3'- -CGUGAAGcUGgGGuUGGUUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 14770 0.69 0.669185
Target:  5'- gGC-CUUCGGCCUUGGCCuucguccagcgccacGGCgCCUCCa -3'
miRNA:   3'- -CGuGAAGCUGGGGUUGG---------------UUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 32548 0.69 0.642396
Target:  5'- -aGCUUCuuGGCCUCGGCCAguaGCUCaUCCa -3'
miRNA:   3'- cgUGAAG--CUGGGGUUGGU---UGAGgAGG- -5'
11563 5' -52.8 NC_003085.1 + 49034 0.7 0.620023
Target:  5'- cGCGaccagCGACUCUucGGCCAACUCCacgUCCg -3'
miRNA:   3'- -CGUgaa--GCUGGGG--UUGGUUGAGG---AGG- -5'
11563 5' -52.8 NC_003085.1 + 10324 0.7 0.608848
Target:  5'- uGCGaugCGGCCCCcGCC-ACgucgCCUCCc -3'
miRNA:   3'- -CGUgaaGCUGGGGuUGGuUGa---GGAGG- -5'
11563 5' -52.8 NC_003085.1 + 13284 0.7 0.597694
Target:  5'- cGCACggCGaacaucggagGCCCCAGCgAGC-CCUUCa -3'
miRNA:   3'- -CGUGaaGC----------UGGGGUUGgUUGaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 22982 0.7 0.597694
Target:  5'- aGgGCUUCG-CCCCGGCag---CCUCCg -3'
miRNA:   3'- -CgUGAAGCuGGGGUUGguugaGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 29056 0.7 0.594353
Target:  5'- aGCAg-UUGGCCaCCAGCCugagccagccuuugGACUUCUCCg -3'
miRNA:   3'- -CGUgaAGCUGG-GGUUGG--------------UUGAGGAGG- -5'
11563 5' -52.8 NC_003085.1 + 14983 0.7 0.586569
Target:  5'- cGCGCUggCGGCCgguGCgCAACUCCUCa -3'
miRNA:   3'- -CGUGAa-GCUGGgguUG-GUUGAGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.