miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11564 3' -53.6 NC_003085.1 + 41319 0.66 0.813557
Target:  5'- aGCCUGCCgcgcGUGGCGuuGUaGaGGcCGCa -3'
miRNA:   3'- -CGGGCGG----UACUGCuuCAaCaCCaGCG- -5'
11564 3' -53.6 NC_003085.1 + 21360 0.66 0.803985
Target:  5'- gGUCCuggGCCAgGACGAAGUcUG-GG-CGCg -3'
miRNA:   3'- -CGGG---CGGUaCUGCUUCA-ACaCCaGCG- -5'
11564 3' -53.6 NC_003085.1 + 47251 0.66 0.803985
Target:  5'- uGCgCGUCAaGACGGAGUacGUGGUgGa -3'
miRNA:   3'- -CGgGCGGUaCUGCUUCAa-CACCAgCg -5'
11564 3' -53.6 NC_003085.1 + 32023 0.66 0.803017
Target:  5'- aGCCCGCCgaggaccuguccgGUGAUGAAGgcaccgGGcUGCu -3'
miRNA:   3'- -CGGGCGG-------------UACUGCUUCaaca--CCaGCG- -5'
11564 3' -53.6 NC_003085.1 + 36915 0.66 0.793243
Target:  5'- -gCCGCCAggcagcguguaggUGccaACGGAGUUGcGuGUCGCg -3'
miRNA:   3'- cgGGCGGU-------------AC---UGCUUCAACaC-CAGCG- -5'
11564 3' -53.6 NC_003085.1 + 40978 0.66 0.784299
Target:  5'- aGCUCGUCAcGGC-AGGUcuUGaGGUCGCg -3'
miRNA:   3'- -CGGGCGGUaCUGcUUCA--ACaCCAGCG- -5'
11564 3' -53.6 NC_003085.1 + 20787 0.66 0.784299
Target:  5'- aUCCGCUAUGAggUGGAGUgggagGaGGUUGCc -3'
miRNA:   3'- cGGGCGGUACU--GCUUCAa----CaCCAGCG- -5'
11564 3' -53.6 NC_003085.1 + 26971 0.66 0.772172
Target:  5'- uGCCCGCCGaGACGguGUUGaguccacccaccGG-CGCc -3'
miRNA:   3'- -CGGGCGGUaCUGCuuCAACa-----------CCaGCG- -5'
11564 3' -53.6 NC_003085.1 + 38981 0.66 0.763967
Target:  5'- cCCCGCCuUGACGAgAGUcgGcGG-CGCc -3'
miRNA:   3'- cGGGCGGuACUGCU-UCAa-CaCCaGCG- -5'
11564 3' -53.6 NC_003085.1 + 37861 0.67 0.753587
Target:  5'- uGCgCGCCgAUGGCGAGGaUGUugacGGucuUCGCu -3'
miRNA:   3'- -CGgGCGG-UACUGCUUCaACA----CC---AGCG- -5'
11564 3' -53.6 NC_003085.1 + 48261 0.67 0.753587
Target:  5'- --gCGCCggGGUGAGGUUGgucaaUGGUCGCc -3'
miRNA:   3'- cggGCGGuaCUGCUUCAAC-----ACCAGCG- -5'
11564 3' -53.6 NC_003085.1 + 27972 0.67 0.73246
Target:  5'- gGCCCgcgaggGCCAUGACGA-GUUGcucGGUgGg -3'
miRNA:   3'- -CGGG------CGGUACUGCUuCAACa--CCAgCg -5'
11564 3' -53.6 NC_003085.1 + 13599 0.67 0.710921
Target:  5'- gGCgCGCCAUGACGccAAGgcacaaGUGGggcacgacugagUCGCa -3'
miRNA:   3'- -CGgGCGGUACUGC--UUCaa----CACC------------AGCG- -5'
11564 3' -53.6 NC_003085.1 + 29371 0.68 0.700027
Target:  5'- cGCUgGCCAUGGcCGAGGUguacgcGUcGUUGCg -3'
miRNA:   3'- -CGGgCGGUACU-GCUUCAa-----CAcCAGCG- -5'
11564 3' -53.6 NC_003085.1 + 38135 0.69 0.644772
Target:  5'- gGCUCGCCGcccugcUGGCGuuGGUgGUGG-CGCu -3'
miRNA:   3'- -CGGGCGGU------ACUGCu-UCAaCACCaGCG- -5'
11564 3' -53.6 NC_003085.1 + 3537 0.69 0.644772
Target:  5'- -gUCGCCGUGAUGGugcucGGcguacGUGGUCGCc -3'
miRNA:   3'- cgGGCGGUACUGCU-----UCaa---CACCAGCG- -5'
11564 3' -53.6 NC_003085.1 + 38055 0.7 0.578168
Target:  5'- cGCCCGaCAUGugGug---GUGcGUCGCg -3'
miRNA:   3'- -CGGGCgGUACugCuucaaCAC-CAGCG- -5'
11564 3' -53.6 NC_003085.1 + 37685 0.7 0.577066
Target:  5'- cGCgaaCGCgGaGGCGAAGUUGaugaugaUGGUCGCu -3'
miRNA:   3'- -CGg--GCGgUaCUGCUUCAAC-------ACCAGCG- -5'
11564 3' -53.6 NC_003085.1 + 40355 0.7 0.556234
Target:  5'- uGCCCagGCCGgcgcaGACGAGGUUGUagGGggGCg -3'
miRNA:   3'- -CGGG--CGGUa----CUGCUUCAACA--CCagCG- -5'
11564 3' -53.6 NC_003085.1 + 16154 0.71 0.502608
Target:  5'- cGCCUGaaugaCCGUGACGccGUgGUGGcCGCg -3'
miRNA:   3'- -CGGGC-----GGUACUGCuuCAaCACCaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.