miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11566 3' -61 NC_003085.1 + 17486 0.66 0.408685
Target:  5'- aGG-CGGCAcauCCUgGCCUGguccCGGCGGUa -3'
miRNA:   3'- -CCgGCCGUu--GGAgUGGAC----GUCGCCGc -5'
11566 3' -61 NC_003085.1 + 3412 0.66 0.408685
Target:  5'- gGGCgGGUgcAGCCguaucgCGCCUGCuggagaacuucgAGCaGGCGa -3'
miRNA:   3'- -CCGgCCG--UUGGa-----GUGGACG------------UCG-CCGC- -5'
11566 3' -61 NC_003085.1 + 45022 0.66 0.408685
Target:  5'- gGGCCaacgaGGCGuuugaGCC-CGgCUGCaucGGCGGCGa -3'
miRNA:   3'- -CCGG-----CCGU-----UGGaGUgGACG---UCGCCGC- -5'
11566 3' -61 NC_003085.1 + 46820 0.66 0.408685
Target:  5'- uGGgCGGCAucACCUCGCC-GCcgAGuuGCGa -3'
miRNA:   3'- -CCgGCCGU--UGGAGUGGaCG--UCgcCGC- -5'
11566 3' -61 NC_003085.1 + 678 0.66 0.407782
Target:  5'- cGCCGGCcACCUguCCcGCGuccggccucgggcGCGGCc -3'
miRNA:   3'- cCGGCCGuUGGAguGGaCGU-------------CGCCGc -5'
11566 3' -61 NC_003085.1 + 3302 0.66 0.399708
Target:  5'- gGGCCGGCccagguagcgccGGCaUCGCCuUGCGGCaucgGGCc -3'
miRNA:   3'- -CCGGCCG------------UUGgAGUGG-ACGUCG----CCGc -5'
11566 3' -61 NC_003085.1 + 30196 0.66 0.399708
Target:  5'- gGGCCGGCGGCggauggCGuCCgUGUAGaggaGGCGg -3'
miRNA:   3'- -CCGGCCGUUGga----GU-GG-ACGUCg---CCGC- -5'
11566 3' -61 NC_003085.1 + 6655 0.66 0.394383
Target:  5'- uGCUGGCGucccaacucguggacGCCUCccugauggcCCUGgAGCGGCu -3'
miRNA:   3'- cCGGCCGU---------------UGGAGu--------GGACgUCGCCGc -5'
11566 3' -61 NC_003085.1 + 16334 0.66 0.390858
Target:  5'- aGCgGGCGuCCUgGag-GCGGCGGCGc -3'
miRNA:   3'- cCGgCCGUuGGAgUggaCGUCGCCGC- -5'
11566 3' -61 NC_003085.1 + 23762 0.66 0.390858
Target:  5'- cGGUgagaGGCAGCCUCGaa-GCGGCaugGGCGa -3'
miRNA:   3'- -CCGg---CCGUUGGAGUggaCGUCG---CCGC- -5'
11566 3' -61 NC_003085.1 + 36225 0.66 0.38998
Target:  5'- cGGUCGGCGACCaUCAUCagcgagcccgccaUGUaccgAGCGGUc -3'
miRNA:   3'- -CCGGCCGUUGG-AGUGG-------------ACG----UCGCCGc -5'
11566 3' -61 NC_003085.1 + 39511 0.66 0.382137
Target:  5'- uGGCgGGCAAUCauggugcgggaaUCGCCUGCA--GGCu -3'
miRNA:   3'- -CCGgCCGUUGG------------AGUGGACGUcgCCGc -5'
11566 3' -61 NC_003085.1 + 1047 0.66 0.382137
Target:  5'- gGGacaCGGCGGCgUguCCUGCcccggcAGCGGCc -3'
miRNA:   3'- -CCg--GCCGUUGgAguGGACG------UCGCCGc -5'
11566 3' -61 NC_003085.1 + 38990 0.66 0.382137
Target:  5'- -aCCgGGCAACCcCGCCUugacgagaGuCGGCGGCGc -3'
miRNA:   3'- ccGG-CCGUUGGaGUGGA--------C-GUCGCCGC- -5'
11566 3' -61 NC_003085.1 + 32243 0.66 0.382137
Target:  5'- cGCC-GCGugCUCACC---AGCGGCGc -3'
miRNA:   3'- cCGGcCGUugGAGUGGacgUCGCCGC- -5'
11566 3' -61 NC_003085.1 + 22761 0.66 0.373546
Target:  5'- cGCCGaCGACgCcCGCC-GCGGUGGCGa -3'
miRNA:   3'- cCGGCcGUUG-GaGUGGaCGUCGCCGC- -5'
11566 3' -61 NC_003085.1 + 1584 0.66 0.373546
Target:  5'- cGCCuGGCGGCCgugaggcgCACCgGCcgaGGCuGGCGa -3'
miRNA:   3'- cCGG-CCGUUGGa-------GUGGaCG---UCG-CCGC- -5'
11566 3' -61 NC_003085.1 + 24408 0.66 0.365088
Target:  5'- uGCCGGUgGACCcgacggugggCACCUaCGGCGGCa -3'
miRNA:   3'- cCGGCCG-UUGGa---------GUGGAcGUCGCCGc -5'
11566 3' -61 NC_003085.1 + 13909 0.66 0.365088
Target:  5'- -uCCGGC-ACUUC-CCUG-GGCGGCGu -3'
miRNA:   3'- ccGGCCGuUGGAGuGGACgUCGCCGC- -5'
11566 3' -61 NC_003085.1 + 41559 0.66 0.365088
Target:  5'- gGGCCGGUAGCagCGCUgGC-GCGGUa -3'
miRNA:   3'- -CCGGCCGUUGgaGUGGaCGuCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.