miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11566 5' -54.7 NC_003085.1 + 44745 0.66 0.736025
Target:  5'- -----aGCCGAGUucc-GCGCUCGCu -3'
miRNA:   3'- gaguagCGGCUCAuuguCGCGAGCGc -5'
11566 5' -54.7 NC_003085.1 + 10539 0.66 0.736025
Target:  5'- gUCGgccaGCCGAGggGCgccaaAGCGC-CGCGg -3'
miRNA:   3'- gAGUag--CGGCUCauUG-----UCGCGaGCGC- -5'
11566 5' -54.7 NC_003085.1 + 7478 0.66 0.725349
Target:  5'- cCUCA-CGCUGgaGGUGACGgGCGUcCGCGu -3'
miRNA:   3'- -GAGUaGCGGC--UCAUUGU-CGCGaGCGC- -5'
11566 5' -54.7 NC_003085.1 + 38880 0.66 0.714579
Target:  5'- gCUCAcacgccUgGCUGAGcGACAGCGCa-GCGa -3'
miRNA:   3'- -GAGU------AgCGGCUCaUUGUCGCGagCGC- -5'
11566 5' -54.7 NC_003085.1 + 13614 0.66 0.714579
Target:  5'- cCUCGgugugaaccCGUCGGGg--UAGCGCUUGCGg -3'
miRNA:   3'- -GAGUa--------GCGGCUCauuGUCGCGAGCGC- -5'
11566 5' -54.7 NC_003085.1 + 40451 0.66 0.703726
Target:  5'- -cCAgCGCCaGAGgcGuCAGCGC-CGCGg -3'
miRNA:   3'- gaGUaGCGG-CUCauU-GUCGCGaGCGC- -5'
11566 5' -54.7 NC_003085.1 + 35752 0.66 0.703726
Target:  5'- gUCcUCGCUGAGcAACugguGGUGCUuCGCGg -3'
miRNA:   3'- gAGuAGCGGCUCaUUG----UCGCGA-GCGC- -5'
11566 5' -54.7 NC_003085.1 + 17219 0.66 0.692801
Target:  5'- cCUCAgcgCGCC-AGUAGCAGaCGC-CGUc -3'
miRNA:   3'- -GAGUa--GCGGcUCAUUGUC-GCGaGCGc -5'
11566 5' -54.7 NC_003085.1 + 1568 0.67 0.670785
Target:  5'- -gCGUCGCCuGcAGUuGCGGCGCggcguaCGCGu -3'
miRNA:   3'- gaGUAGCGG-C-UCAuUGUCGCGa-----GCGC- -5'
11566 5' -54.7 NC_003085.1 + 24412 0.67 0.670785
Target:  5'- -cCGUCGCCGu---AgAGCGC-CGCGg -3'
miRNA:   3'- gaGUAGCGGCucauUgUCGCGaGCGC- -5'
11566 5' -54.7 NC_003085.1 + 12267 0.67 0.670785
Target:  5'- ---uUCGCCGGGa---AGCGCUCGaCGu -3'
miRNA:   3'- gaguAGCGGCUCauugUCGCGAGC-GC- -5'
11566 5' -54.7 NC_003085.1 + 5747 0.67 0.667468
Target:  5'- -gCAUC-CCGAaUGgccggaaucucuccGCGGCGCUCGCGc -3'
miRNA:   3'- gaGUAGcGGCUcAU--------------UGUCGCGAGCGC- -5'
11566 5' -54.7 NC_003085.1 + 21614 0.67 0.658607
Target:  5'- gCUCG-CGCCG-GUAGucacgcagggcguCAGCGC-CGCGa -3'
miRNA:   3'- -GAGUaGCGGCuCAUU-------------GUCGCGaGCGC- -5'
11566 5' -54.7 NC_003085.1 + 40640 0.67 0.64862
Target:  5'- cCUCGUCGCCcuGAcGcUGGCuGCGC-CGCGc -3'
miRNA:   3'- -GAGUAGCGG--CU-C-AUUGuCGCGaGCGC- -5'
11566 5' -54.7 NC_003085.1 + 18863 0.67 0.64862
Target:  5'- uCUCGUCGCUcAGcGACAGCcGCcuUCGCu -3'
miRNA:   3'- -GAGUAGCGGcUCaUUGUCG-CG--AGCGc -5'
11566 5' -54.7 NC_003085.1 + 28604 0.68 0.626392
Target:  5'- -aCA-CGCCG-GUggUguGGCGCUCGCu -3'
miRNA:   3'- gaGUaGCGGCuCAuuG--UCGCGAGCGc -5'
11566 5' -54.7 NC_003085.1 + 37201 0.68 0.626392
Target:  5'- -cCGUCGCCGugcccggcGUGACGGUGCcagcacUCGUGa -3'
miRNA:   3'- gaGUAGCGGCu-------CAUUGUCGCG------AGCGC- -5'
11566 5' -54.7 NC_003085.1 + 34616 0.68 0.626392
Target:  5'- -----gGCCGGcUggUGGCGCUCGCGg -3'
miRNA:   3'- gaguagCGGCUcAuuGUCGCGAGCGC- -5'
11566 5' -54.7 NC_003085.1 + 38073 0.68 0.626392
Target:  5'- -gCGUCGCgGAGacGGCAGCGCagGUGu -3'
miRNA:   3'- gaGUAGCGgCUCa-UUGUCGCGagCGC- -5'
11566 5' -54.7 NC_003085.1 + 42443 0.68 0.604186
Target:  5'- gCUCAUgcCGCCGAG-GGCAuGCGCgaGCGg -3'
miRNA:   3'- -GAGUA--GCGGCUCaUUGU-CGCGagCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.