miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11567 3' -57.2 NC_003085.1 + 46999 0.67 0.476381
Target:  5'- cUGCGcGCGccgaaccuguGCcgCCUGCCGCGGuGACGa -3'
miRNA:   3'- cAUGC-CGC----------CGuaGGACGGCGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 36097 0.67 0.465234
Target:  5'- aUACGGCGuGCccauggccgccAUCCgccaagcUGUCGCGGAGCGu -3'
miRNA:   3'- cAUGCCGC-CG-----------UAGG-------ACGGCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 24433 0.68 0.460213
Target:  5'- cUACGGCGGCAUCaaccgcgcgCUGUggcccuucuggcgcuCGCAGGugGa -3'
miRNA:   3'- cAUGCCGCCGUAG---------GACG---------------GCGUCUugU- -5'
11567 3' -57.2 NC_003085.1 + 48417 0.68 0.446308
Target:  5'- --uCGGCGGCGcuggcuUCCU-CCGCAuGGACGg -3'
miRNA:   3'- cauGCCGCCGU------AGGAcGGCGU-CUUGU- -5'
11567 3' -57.2 NC_003085.1 + 6326 0.68 0.446308
Target:  5'- -cACGGCGGCGUCgUGUaggcgucgaccaUGuCGGAGCGc -3'
miRNA:   3'- caUGCCGCCGUAGgACG------------GC-GUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 9636 0.68 0.446308
Target:  5'- -gGCGGCGGCAggCCaaacGCCGCucuuuGGGAUg -3'
miRNA:   3'- caUGCCGCCGUa-GGa---CGGCG-----UCUUGu -5'
11567 3' -57.2 NC_003085.1 + 26906 0.68 0.446308
Target:  5'- -gGCGGgGGCAcacgCCUGgCGCgcaGGGGCAu -3'
miRNA:   3'- caUGCCgCCGUa---GGACgGCG---UCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 41425 0.68 0.40792
Target:  5'- -gAC-GCGGCccggCCUGCCGUAGAAg- -3'
miRNA:   3'- caUGcCGCCGua--GGACGGCGUCUUgu -5'
11567 3' -57.2 NC_003085.1 + 46749 0.68 0.40792
Target:  5'- -aGCGGCGGCGcUCCagGCgGCGGcgaAGCGc -3'
miRNA:   3'- caUGCCGCCGU-AGGa-CGgCGUC---UUGU- -5'
11567 3' -57.2 NC_003085.1 + 38158 0.68 0.40792
Target:  5'- --gUGGUGGCGcUCCccGCCGCGGcGCAg -3'
miRNA:   3'- cauGCCGCCGU-AGGa-CGGCGUCuUGU- -5'
11567 3' -57.2 NC_003085.1 + 44680 0.69 0.39865
Target:  5'- aGUGCGGCGGgG-CCUuUCGUGGGACGg -3'
miRNA:   3'- -CAUGCCGCCgUaGGAcGGCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 17972 0.69 0.389516
Target:  5'- -aGCGcCGGCAgcgCggGCCGCAGGGCAc -3'
miRNA:   3'- caUGCcGCCGUa--GgaCGGCGUCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 38430 0.69 0.38052
Target:  5'- --cCGGCGGCAUUCgUGCC-CAGGAa- -3'
miRNA:   3'- cauGCCGCCGUAGG-ACGGcGUCUUgu -5'
11567 3' -57.2 NC_003085.1 + 10277 0.69 0.371664
Target:  5'- --cUGGCGGCcUCCcGCgGguGAGCAg -3'
miRNA:   3'- cauGCCGCCGuAGGaCGgCguCUUGU- -5'
11567 3' -57.2 NC_003085.1 + 8645 0.69 0.36295
Target:  5'- -gACGGCGGCAUgCCacgguuguUGCgGCGGgAGCGg -3'
miRNA:   3'- caUGCCGCCGUA-GG--------ACGgCGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 807 0.7 0.32953
Target:  5'- -cACGGUGGaCGUCCgcgugccGCCGCAGGuCGu -3'
miRNA:   3'- caUGCCGCC-GUAGGa------CGGCGUCUuGU- -5'
11567 3' -57.2 NC_003085.1 + 46818 0.7 0.32953
Target:  5'- cUugGGCGGCAUcaCCUcGCCGCcGAguuGCGa -3'
miRNA:   3'- cAugCCGCCGUA--GGA-CGGCGuCU---UGU- -5'
11567 3' -57.2 NC_003085.1 + 20965 0.7 0.328724
Target:  5'- gGUGCGGUGGCuggCCUuCCGCAaccuccuGGACAu -3'
miRNA:   3'- -CAUGCCGCCGua-GGAcGGCGU-------CUUGU- -5'
11567 3' -57.2 NC_003085.1 + 18964 0.7 0.313692
Target:  5'- -gACGGUGGCGcgcuUCCUGC-GCAGcAACGc -3'
miRNA:   3'- caUGCCGCCGU----AGGACGgCGUC-UUGU- -5'
11567 3' -57.2 NC_003085.1 + 19996 0.71 0.298436
Target:  5'- cUugGcGCgGGCGUCgUGCgGCAGGACGu -3'
miRNA:   3'- cAugC-CG-CCGUAGgACGgCGUCUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.