miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11568 5' -64.3 NC_003085.1 + 40217 0.66 0.286434
Target:  5'- cCUGGCuGGCCcucGCCauUGGUGGCGGg -3'
miRNA:   3'- cGGCCG-CUGGcacCGG--ACCACCGCCa -5'
11568 5' -64.3 NC_003085.1 + 12982 0.66 0.279674
Target:  5'- uCUGGCGGCCGUGGCggGGUcGCc-- -3'
miRNA:   3'- cGGCCGCUGGCACCGgaCCAcCGcca -5'
11568 5' -64.3 NC_003085.1 + 8974 0.66 0.266535
Target:  5'- --aGGCG-Caa-GGCCuUGGUGGCGGUg -3'
miRNA:   3'- cggCCGCuGgcaCCGG-ACCACCGCCA- -5'
11568 5' -64.3 NC_003085.1 + 47584 0.66 0.260155
Target:  5'- cCCGGUGGCCGUaucGCa--GUGGCGGa -3'
miRNA:   3'- cGGCCGCUGGCAc--CGgacCACCGCCa -5'
11568 5' -64.3 NC_003085.1 + 30195 0.67 0.2539
Target:  5'- gGCCGGCGGCgGaUGGCgUccguguagaGGaGGCGGc -3'
miRNA:   3'- -CGGCCGCUGgC-ACCGgA---------CCaCCGCCa -5'
11568 5' -64.3 NC_003085.1 + 40735 0.67 0.24777
Target:  5'- cGCCGGCG-CCGgaGGCaCUGGaGGUGu- -3'
miRNA:   3'- -CGGCCGCuGGCa-CCG-GACCaCCGCca -5'
11568 5' -64.3 NC_003085.1 + 27521 0.67 0.230111
Target:  5'- cGCCGGCauggauGACucccuCGUGGCCaucuccGGcGGCGGUg -3'
miRNA:   3'- -CGGCCG------CUG-----GCACCGGa-----CCaCCGCCA- -5'
11568 5' -64.3 NC_003085.1 + 28215 0.68 0.203048
Target:  5'- aGuuGGCG-CCaGUgucGGCCaugGGUGGCGGc -3'
miRNA:   3'- -CggCCGCuGG-CA---CCGGa--CCACCGCCa -5'
11568 5' -64.3 NC_003085.1 + 3936 0.68 0.197978
Target:  5'- gGCgGGCGcgccgucgacgcGCCGUGGuCCUGGaugGGCaGUg -3'
miRNA:   3'- -CGgCCGC------------UGGCACC-GGACCa--CCGcCA- -5'
11568 5' -64.3 NC_003085.1 + 26942 0.68 0.193019
Target:  5'- aCCGGCG-CCGgcaggUGcGCCUccugaaucgagGGUGGCGGg -3'
miRNA:   3'- cGGCCGCuGGC-----AC-CGGA-----------CCACCGCCa -5'
11568 5' -64.3 NC_003085.1 + 20412 0.68 0.191553
Target:  5'- cGCUgaGGCG-CCGUGGCCcagagUucauccagggugaaGGUGGCGGg -3'
miRNA:   3'- -CGG--CCGCuGGCACCGG-----A--------------CCACCGCCa -5'
11568 5' -64.3 NC_003085.1 + 24367 0.69 0.174258
Target:  5'- gGCCuuuGGCGGCCGggccaucaaUGGCCUGGacggGGCcGUg -3'
miRNA:   3'- -CGG---CCGCUGGC---------ACCGGACCa---CCGcCA- -5'
11568 5' -64.3 NC_003085.1 + 880 0.69 0.16852
Target:  5'- -gCGGCGgcacgcggacguccACCGUGGCCUGG-GGCc-- -3'
miRNA:   3'- cgGCCGC--------------UGGCACCGGACCaCCGcca -5'
11568 5' -64.3 NC_003085.1 + 1584 0.69 0.161272
Target:  5'- cGCCuGGCGGCCGUgaggcgcaccGGCCgaGGcUGGCGa- -3'
miRNA:   3'- -CGG-CCGCUGGCA----------CCGGa-CC-ACCGCca -5'
11568 5' -64.3 NC_003085.1 + 46402 0.7 0.134306
Target:  5'- uGCgCGGUGACaucgcaGUGGUCUGGcgGGCGaGUg -3'
miRNA:   3'- -CG-GCCGCUGg-----CACCGGACCa-CCGC-CA- -5'
11568 5' -64.3 NC_003085.1 + 17486 0.71 0.1274
Target:  5'- --aGGCGGCacauccUGGCCUGGUcccGGCGGUa -3'
miRNA:   3'- cggCCGCUGgc----ACCGGACCA---CCGCCA- -5'
11568 5' -64.3 NC_003085.1 + 33718 0.73 0.080733
Target:  5'- uGCUGGCcGCCGUGGCCcucuucgccugUGGUGGCc-- -3'
miRNA:   3'- -CGGCCGcUGGCACCGG-----------ACCACCGcca -5'
11568 5' -64.3 NC_003085.1 + 25162 1.08 0.000147
Target:  5'- gGCCGGCGACCGUGGCCUGGUGGCGGUg -3'
miRNA:   3'- -CGGCCGCUGGCACCGGACCACCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.