miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11569 3' -59 NC_003085.1 + 46536 0.66 0.489901
Target:  5'- ---aCCGCCCUugGUGAUGGACucuGGGUg -3'
miRNA:   3'- agaaGGCGGGA--CGCUGCCUGcu-CCUA- -5'
11569 3' -59 NC_003085.1 + 42551 0.66 0.489901
Target:  5'- --cUCgGCCa-GCGcGCGGGCGAGGGc -3'
miRNA:   3'- agaAGgCGGgaCGC-UGCCUGCUCCUa -5'
11569 3' -59 NC_003085.1 + 30334 0.66 0.479827
Target:  5'- --gUCCG-CCUGgGGCGG-CGGGGGc -3'
miRNA:   3'- agaAGGCgGGACgCUGCCuGCUCCUa -5'
11569 3' -59 NC_003085.1 + 16021 0.66 0.479827
Target:  5'- gUCggugUCaCGCCCUGgauuuGCGGGCGAGGu- -3'
miRNA:   3'- -AGa---AG-GCGGGACgc---UGCCUGCUCCua -5'
11569 3' -59 NC_003085.1 + 10694 0.66 0.459992
Target:  5'- ---aCCaGCCCUGCGcGCGGcccGCGAGGc- -3'
miRNA:   3'- agaaGG-CGGGACGC-UGCC---UGCUCCua -5'
11569 3' -59 NC_003085.1 + 43430 0.66 0.459992
Target:  5'- gCUUgCCGCCUacgacgccGCGAaGGGCGGGGAg -3'
miRNA:   3'- aGAA-GGCGGGa-------CGCUgCCUGCUCCUa -5'
11569 3' -59 NC_003085.1 + 17013 0.66 0.450238
Target:  5'- cCUUCCcaggugugcgggGCCUUGCccuccACGGGCGGGGGc -3'
miRNA:   3'- aGAAGG------------CGGGACGc----UGCCUGCUCCUa -5'
11569 3' -59 NC_003085.1 + 34295 0.67 0.440599
Target:  5'- -gUUCCGCCgaGCGucGCGGGC-AGGGc -3'
miRNA:   3'- agAAGGCGGgaCGC--UGCCUGcUCCUa -5'
11569 3' -59 NC_003085.1 + 7816 0.67 0.403259
Target:  5'- aCggCCGUCCUcgGUGACGGAguaccCGGGGAa -3'
miRNA:   3'- aGaaGGCGGGA--CGCUGCCU-----GCUCCUa -5'
11569 3' -59 NC_003085.1 + 34334 0.67 0.394241
Target:  5'- gCUgcuaCGuCCCUGUGAaGGGCGAGGGc -3'
miRNA:   3'- aGAag--GC-GGGACGCUgCCUGCUCCUa -5'
11569 3' -59 NC_003085.1 + 31802 0.69 0.304022
Target:  5'- cCggCCGCUC-GCGACGGAcacaccCGAGGAg -3'
miRNA:   3'- aGaaGGCGGGaCGCUGCCU------GCUCCUa -5'
11569 3' -59 NC_003085.1 + 24126 0.7 0.289428
Target:  5'- gCUUcCCGCgCUucGCcaGGCGGGCGAGGAUg -3'
miRNA:   3'- aGAA-GGCGgGA--CG--CUGCCUGCUCCUA- -5'
11569 3' -59 NC_003085.1 + 411 0.7 0.289428
Target:  5'- cCUUgCCGCCCUucuugGCGGCGGgcuucuucuucGCGGGGGc -3'
miRNA:   3'- aGAA-GGCGGGA-----CGCUGCC-----------UGCUCCUa -5'
11569 3' -59 NC_003085.1 + 42003 0.7 0.268576
Target:  5'- -gUUCCuGCCCcgGCGgcgucggcACGGACGAGGGc -3'
miRNA:   3'- agAAGG-CGGGa-CGC--------UGCCUGCUCCUa -5'
11569 3' -59 NC_003085.1 + 46698 0.71 0.22465
Target:  5'- --gUCUGCCCgGCaGcCGGGCGAGGAg -3'
miRNA:   3'- agaAGGCGGGaCG-CuGCCUGCUCCUa -5'
11569 3' -59 NC_003085.1 + 25710 1.06 0.000569
Target:  5'- aUCUUCCGCCCUGCGACGGACGAGGAUa -3'
miRNA:   3'- -AGAAGGCGGGACGCUGCCUGCUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.