miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11569 5' -53.1 NC_003085.1 + 3338 0.66 0.823563
Target:  5'- -gGUCGCCGCaCAG-ACGAcGCuccCCg -3'
miRNA:   3'- gaUAGCGGCG-GUCaUGCUcCGuaaGG- -5'
11569 5' -53.1 NC_003085.1 + 41233 0.66 0.823563
Target:  5'- --cUUGCCcagguaGCC-GUugGAGGCAU-CCg -3'
miRNA:   3'- gauAGCGG------CGGuCAugCUCCGUAaGG- -5'
11569 5' -53.1 NC_003085.1 + 18647 0.66 0.814118
Target:  5'- --uUCGCCGUgcccccgcgcauCuGUGCGAGcGCAcUCCu -3'
miRNA:   3'- gauAGCGGCG------------GuCAUGCUC-CGUaAGG- -5'
11569 5' -53.1 NC_003085.1 + 44931 0.66 0.814118
Target:  5'- uUGUCGCCGCCGaUGCagccGGGCucaaacgCCu -3'
miRNA:   3'- gAUAGCGGCGGUcAUGc---UCCGuaa----GG- -5'
11569 5' -53.1 NC_003085.1 + 46651 0.66 0.814118
Target:  5'- ---gUGuuGCCAGUGaugcCGAGGCGcUUCg -3'
miRNA:   3'- gauaGCggCGGUCAU----GCUCCGUaAGG- -5'
11569 5' -53.1 NC_003085.1 + 12708 0.66 0.804473
Target:  5'- ---aCGCCGCUGGUGCGcuGGGaGUaCCg -3'
miRNA:   3'- gauaGCGGCGGUCAUGC--UCCgUAaGG- -5'
11569 5' -53.1 NC_003085.1 + 39584 0.66 0.803499
Target:  5'- ---aCGauGCCAGcgACGAGGCGcaccggcUUCCg -3'
miRNA:   3'- gauaGCggCGGUCa-UGCUCCGU-------AAGG- -5'
11569 5' -53.1 NC_003085.1 + 17199 0.66 0.794641
Target:  5'- ---aCGCCGuCCAGUGCcuccugguAGGCG-UCCu -3'
miRNA:   3'- gauaGCGGC-GGUCAUGc-------UCCGUaAGG- -5'
11569 5' -53.1 NC_003085.1 + 11946 0.66 0.785641
Target:  5'- -gGUCGCCGCCugggcGUGaaggaGGGGCGgcgugagcggauuggUCCu -3'
miRNA:   3'- gaUAGCGGCGGu----CAUg----CUCCGUa--------------AGG- -5'
11569 5' -53.1 NC_003085.1 + 38927 0.66 0.784632
Target:  5'- gCUGUCGCCGCgcgccgucgCAGUgggACGAcgcGGCAgugcgCCc -3'
miRNA:   3'- -GAUAGCGGCG---------GUCA---UGCU---CCGUaa---GG- -5'
11569 5' -53.1 NC_003085.1 + 8627 0.66 0.784632
Target:  5'- uUGUUGCgGCgGGaGCGGGGCAagUCa -3'
miRNA:   3'- gAUAGCGgCGgUCaUGCUCCGUa-AGg -5'
11569 5' -53.1 NC_003085.1 + 29735 0.67 0.774459
Target:  5'- -cGUCGUCGcCCAGgACGuGGCcg-CCg -3'
miRNA:   3'- gaUAGCGGC-GGUCaUGCuCCGuaaGG- -5'
11569 5' -53.1 NC_003085.1 + 38388 0.67 0.774459
Target:  5'- cCUAUUugGCC-CCAGUACG-GGCA--CCg -3'
miRNA:   3'- -GAUAG--CGGcGGUCAUGCuCCGUaaGG- -5'
11569 5' -53.1 NC_003085.1 + 31463 0.67 0.774459
Target:  5'- cCUcgCGCCGUCGGacAgGAGGCAgugagUCa -3'
miRNA:   3'- -GAuaGCGGCGGUCa-UgCUCCGUa----AGg -5'
11569 5' -53.1 NC_003085.1 + 10209 0.67 0.774459
Target:  5'- ---cCGCCGCgCAGUuCGcGGUAgUCCg -3'
miRNA:   3'- gauaGCGGCG-GUCAuGCuCCGUaAGG- -5'
11569 5' -53.1 NC_003085.1 + 8497 0.67 0.764132
Target:  5'- gCUggC-CCGCCAGUACGAcGCGcaCCa -3'
miRNA:   3'- -GAuaGcGGCGGUCAUGCUcCGUaaGG- -5'
11569 5' -53.1 NC_003085.1 + 48583 0.67 0.743068
Target:  5'- --cUCGCCGCCgagaaggaGGUcgcagcgcucaACGAGGCGcuugCCg -3'
miRNA:   3'- gauAGCGGCGG--------UCA-----------UGCUCCGUaa--GG- -5'
11569 5' -53.1 NC_003085.1 + 16344 0.67 0.743068
Target:  5'- gCUGUCucugGCCGacgacaaGGgcacCGAGGCAUUCCa -3'
miRNA:   3'- -GAUAG----CGGCgg-----UCau--GCUCCGUAAGG- -5'
11569 5' -53.1 NC_003085.1 + 37123 0.67 0.743068
Target:  5'- -cGUCGgCGCCAGcGCGguacAGGCcggugUCCg -3'
miRNA:   3'- gaUAGCgGCGGUCaUGC----UCCGua---AGG- -5'
11569 5' -53.1 NC_003085.1 + 20093 0.67 0.732354
Target:  5'- gCUGUgacgUGCCGCaGGUgGCGGGGCuggagUCCg -3'
miRNA:   3'- -GAUA----GCGGCGgUCA-UGCUCCGua---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.