Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11570 | 3' | -56.1 | NC_003085.1 | + | 43893 | 0.66 | 0.664228 |
|
Target: 5'- gCGUGCCgGGAUGUGggUCUUCAGc--- -3' miRNA: 3'- -GCACGG-CCUGCGCgaAGAGGUCuucu -5' |
|||||||
| 11570 | 3' | -56.1 | NC_003085.1 | + | 31373 | 0.66 | 0.653251 |
|
Target: 5'- gGUGUCGGGCGCGCcugcccgcgCUuaCCGGAuGGc -3' miRNA: 3'- gCACGGCCUGCGCGaa-------GA--GGUCUuCU- -5' |
|||||||
| 11570 | 3' | -56.1 | NC_003085.1 | + | 35894 | 0.66 | 0.642256 |
|
Target: 5'- --cGCCGGAgcuucUGCgGCUcCUCCGGGAGc -3' miRNA: 3'- gcaCGGCCU-----GCG-CGAaGAGGUCUUCu -5' |
|||||||
| 11570 | 3' | -56.1 | NC_003085.1 | + | 2927 | 0.68 | 0.544007 |
|
Target: 5'- aGU-CUGGAUGcCGCUggUCCAGGAGGa -3' miRNA: 3'- gCAcGGCCUGC-GCGAagAGGUCUUCU- -5' |
|||||||
| 11570 | 3' | -56.1 | NC_003085.1 | + | 40709 | 0.69 | 0.461044 |
|
Target: 5'- gGUGCUGGACGCGCcgguggaccUCUcgccggcgCCGGAGGc -3' miRNA: 3'- gCACGGCCUGCGCGa--------AGA--------GGUCUUCu -5' |
|||||||
| 11570 | 3' | -56.1 | NC_003085.1 | + | 1896 | 0.7 | 0.422127 |
|
Target: 5'- --aGCCGG-UGCGCUUCaaCAGggGGc -3' miRNA: 3'- gcaCGGCCuGCGCGAAGagGUCuuCU- -5' |
|||||||
| 11570 | 3' | -56.1 | NC_003085.1 | + | 4459 | 0.72 | 0.326057 |
|
Target: 5'- gCGUGCCGGaACGCGuCUaCUCUcGAAGu -3' miRNA: 3'- -GCACGGCC-UGCGC-GAaGAGGuCUUCu -5' |
|||||||
| 11570 | 3' | -56.1 | NC_003085.1 | + | 21013 | 0.75 | 0.18984 |
|
Target: 5'- uCGUGCCaGACGCGCgcggggCUCCAuAGGAc -3' miRNA: 3'- -GCACGGcCUGCGCGaa----GAGGUcUUCU- -5' |
|||||||
| 11570 | 3' | -56.1 | NC_003085.1 | + | 25888 | 1.09 | 0.000759 |
|
Target: 5'- cCGUGCCGGACGCGCUUCUCCAGAAGAu -3' miRNA: 3'- -GCACGGCCUGCGCGAAGAGGUCUUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home