miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11570 5' -57 NC_003085.1 + 16323 0.66 0.583462
Target:  5'- gGCCCg---GGAGuuGGGCGAAGcGCUg -3'
miRNA:   3'- aCGGGagcaCCUCu-UCCGCUUCcUGA- -5'
11570 5' -57 NC_003085.1 + 30429 0.66 0.583462
Target:  5'- cGCCCUUGcUGGAGGAGGUGcaucuuCUg -3'
miRNA:   3'- aCGGGAGC-ACCUCUUCCGCuuccu-GA- -5'
11570 5' -57 NC_003085.1 + 42324 0.66 0.583462
Target:  5'- cGCCCUgcCGcUGGAGuAGcGCGAgccgucccguGGGACg -3'
miRNA:   3'- aCGGGA--GC-ACCUCuUC-CGCU----------UCCUGa -5'
11570 5' -57 NC_003085.1 + 23168 0.66 0.550893
Target:  5'- cGCCCUacaUGGGGAugauucAGGCcGAGGGCc -3'
miRNA:   3'- aCGGGAgc-ACCUCU------UCCGcUUCCUGa -5'
11570 5' -57 NC_003085.1 + 35941 0.67 0.540155
Target:  5'- aUGCCCUCGU--AGAAuGGCGucGGGAa- -3'
miRNA:   3'- -ACGGGAGCAccUCUU-CCGCu-UCCUga -5'
11570 5' -57 NC_003085.1 + 42623 0.67 0.529489
Target:  5'- aGCCCUCGcccgcgcgcUGGccGAGGCGAagcGGGAg- -3'
miRNA:   3'- aCGGGAGC---------ACCucUUCCGCU---UCCUga -5'
11570 5' -57 NC_003085.1 + 24635 0.67 0.529489
Target:  5'- cGCuucaCCUCGgcGGAGGAGGCGAAccucGGCUu -3'
miRNA:   3'- aCG----GGAGCa-CCUCUUCCGCUUc---CUGA- -5'
11570 5' -57 NC_003085.1 + 7811 0.67 0.529489
Target:  5'- cGUCCUCGgugacGGAGuacccGGGGaaCGAGGGACa -3'
miRNA:   3'- aCGGGAGCa----CCUC-----UUCC--GCUUCCUGa -5'
11570 5' -57 NC_003085.1 + 18441 0.67 0.517846
Target:  5'- uUGCCCgcgUCGUGGAcguccugGAGGaGCGcguGGACUu -3'
miRNA:   3'- -ACGGG---AGCACCU-------CUUC-CGCuu-CCUGA- -5'
11570 5' -57 NC_003085.1 + 48773 0.67 0.508397
Target:  5'- uUGCCC-CGUGGcGAcuGGCGGcgcuucuucgcGGGGCUc -3'
miRNA:   3'- -ACGGGaGCACCuCUu-CCGCU-----------UCCUGA- -5'
11570 5' -57 NC_003085.1 + 24459 0.67 0.508397
Target:  5'- gGCCCUUcUGGcGcucgcAGGUGGAGGACa -3'
miRNA:   3'- aCGGGAGcACCuCu----UCCGCUUCCUGa -5'
11570 5' -57 NC_003085.1 + 49414 0.67 0.487669
Target:  5'- gGCCCccaaUGUGGGGAgaGGGCG--GGACg -3'
miRNA:   3'- aCGGGa---GCACCUCU--UCCGCuuCCUGa -5'
11570 5' -57 NC_003085.1 + 42933 0.67 0.487669
Target:  5'- cGCCCcCGgccgGGccGGGAGGUGggGaGACg -3'
miRNA:   3'- aCGGGaGCa---CC--UCUUCCGCuuC-CUGa -5'
11570 5' -57 NC_003085.1 + 28162 0.67 0.487669
Target:  5'- cUGCCCaaGuUGGuGAAGGCGGacAGGAg- -3'
miRNA:   3'- -ACGGGagC-ACCuCUUCCGCU--UCCUga -5'
11570 5' -57 NC_003085.1 + 14490 0.67 0.486643
Target:  5'- aGCCCUCGcGGAGcaucuccAAGGCGAuGcGCUc -3'
miRNA:   3'- aCGGGAGCaCCUC-------UUCCGCUuCcUGA- -5'
11570 5' -57 NC_003085.1 + 32409 0.68 0.466342
Target:  5'- gUGCCaUCGUGGAagaccucgccaagGAGGGCGucguuGGACc -3'
miRNA:   3'- -ACGGgAGCACCU-------------CUUCCGCuu---CCUGa -5'
11570 5' -57 NC_003085.1 + 46867 0.68 0.447471
Target:  5'- uUGgCCUCGgaggcaggGGAGAGGGUGcccguGGGCUu -3'
miRNA:   3'- -ACgGGAGCa-------CCUCUUCCGCuu---CCUGA- -5'
11570 5' -57 NC_003085.1 + 28651 0.69 0.418563
Target:  5'- -cCCUUCcUGGAGgcGGgGAAGGGCg -3'
miRNA:   3'- acGGGAGcACCUCuuCCgCUUCCUGa -5'
11570 5' -57 NC_003085.1 + 18758 0.69 0.399933
Target:  5'- aGCCgC-CGcUGGAGcGGGCGAuGGACa -3'
miRNA:   3'- aCGG-GaGC-ACCUCuUCCGCUuCCUGa -5'
11570 5' -57 NC_003085.1 + 17750 0.69 0.390818
Target:  5'- cGCCUUCG-GGAGAuGGCGcGAGaGAUUg -3'
miRNA:   3'- aCGGGAGCaCCUCUuCCGC-UUC-CUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.