miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11571 3' -55.2 NC_003085.1 + 33060 0.66 0.69631
Target:  5'- gGGACGCuACCuUGCuGCAucGCca-GGACGu -3'
miRNA:   3'- -CCUGCG-UGG-ACGuCGU--CGuuaCCUGC- -5'
11571 3' -55.2 NC_003085.1 + 5534 0.66 0.69631
Target:  5'- aGGGCaGCACgUGguGCuGCAuccgGGAgCGg -3'
miRNA:   3'- -CCUG-CGUGgACguCGuCGUua--CCU-GC- -5'
11571 3' -55.2 NC_003085.1 + 19799 0.66 0.685312
Target:  5'- cGGcuACGCACCgGCGGC----GUGGACa -3'
miRNA:   3'- -CC--UGCGUGGaCGUCGucguUACCUGc -5'
11571 3' -55.2 NC_003085.1 + 32028 0.66 0.685312
Target:  5'- -uGCGUACCgGC-GCGGUGAUGGggGCGg -3'
miRNA:   3'- ccUGCGUGGaCGuCGUCGUUACC--UGC- -5'
11571 3' -55.2 NC_003085.1 + 23426 0.66 0.685312
Target:  5'- gGGGCuGCGCCUcgGCGGCcGGCGGcgcuUGGcCGg -3'
miRNA:   3'- -CCUG-CGUGGA--CGUCG-UCGUU----ACCuGC- -5'
11571 3' -55.2 NC_003085.1 + 47797 0.66 0.678688
Target:  5'- -cGCGCACCgcgcccgucagcagGC-GCAGCAGUcGACGa -3'
miRNA:   3'- ccUGCGUGGa-------------CGuCGUCGUUAcCUGC- -5'
11571 3' -55.2 NC_003085.1 + 42490 0.66 0.674262
Target:  5'- aGGugGC-CCUuuacCAGCAcGUcAUGGACGa -3'
miRNA:   3'- -CCugCGuGGAc---GUCGU-CGuUACCUGC- -5'
11571 3' -55.2 NC_003085.1 + 43501 0.66 0.674262
Target:  5'- -cAC-CGCCUcCAGCAGCccggcGUGGACGg -3'
miRNA:   3'- ccUGcGUGGAcGUCGUCGu----UACCUGC- -5'
11571 3' -55.2 NC_003085.1 + 25314 0.66 0.674262
Target:  5'- uGGACGaCGCC-GUGGUGGCcaccgacaaGGUGGAUGg -3'
miRNA:   3'- -CCUGC-GUGGaCGUCGUCG---------UUACCUGC- -5'
11571 3' -55.2 NC_003085.1 + 49253 0.66 0.674262
Target:  5'- aGGA-GCAgCgGCGGCAGgAccGGGCGg -3'
miRNA:   3'- -CCUgCGUgGaCGUCGUCgUuaCCUGC- -5'
11571 3' -55.2 NC_003085.1 + 32115 0.66 0.663171
Target:  5'- uGGACacgGCACUcGguGguGCGAcggGGGCGg -3'
miRNA:   3'- -CCUG---CGUGGaCguCguCGUUa--CCUGC- -5'
11571 3' -55.2 NC_003085.1 + 28567 0.66 0.663171
Target:  5'- uGGACGgAgaaUGCAGUgcaggcgcacauGGCGGUGGACa -3'
miRNA:   3'- -CCUGCgUgg-ACGUCG------------UCGUUACCUGc -5'
11571 3' -55.2 NC_003085.1 + 11982 0.66 0.66206
Target:  5'- cGGAUugGUccucuugGCCUGCGGCAGCAGcGGcCu -3'
miRNA:   3'- -CCUG--CG-------UGGACGUCGUCGUUaCCuGc -5'
11571 3' -55.2 NC_003085.1 + 20839 0.66 0.650937
Target:  5'- cGGAUGCggcacagcccgaaGCCggGCAGCAGCcgguccUGGAgGg -3'
miRNA:   3'- -CCUGCG-------------UGGa-CGUCGUCGuu----ACCUgC- -5'
11571 3' -55.2 NC_003085.1 + 15836 0.66 0.650937
Target:  5'- uGACGCGCUcaaacgccucgauUGCAGCGGCAuccuucgGGuCa -3'
miRNA:   3'- cCUGCGUGG-------------ACGUCGUCGUua-----CCuGc -5'
11571 3' -55.2 NC_003085.1 + 20112 0.67 0.640911
Target:  5'- aGGGCGCGg--GCGGCGGCAAUGc-CGu -3'
miRNA:   3'- -CCUGCGUggaCGUCGUCGUUACcuGC- -5'
11571 3' -55.2 NC_003085.1 + 48806 0.67 0.634223
Target:  5'- uGACGCGCC-GCucacggacaggcgagAGguGCuGGUGGGCGa -3'
miRNA:   3'- cCUGCGUGGaCG---------------UCguCG-UUACCUGC- -5'
11571 3' -55.2 NC_003085.1 + 42733 0.67 0.629764
Target:  5'- uGGGCGUcgggGCgaUGCgGGC-GCGGUGGACGg -3'
miRNA:   3'- -CCUGCG----UGg-ACG-UCGuCGUUACCUGC- -5'
11571 3' -55.2 NC_003085.1 + 12023 0.67 0.629764
Target:  5'- uGGCGCACCUGCcGguGCugcGcGACu -3'
miRNA:   3'- cCUGCGUGGACGuCguCGuuaC-CUGc -5'
11571 3' -55.2 NC_003085.1 + 3934 0.67 0.629764
Target:  5'- cGGGCGCGCCgucgacgcGCcGUGGUccugGAUGGGCa -3'
miRNA:   3'- -CCUGCGUGGa-------CGuCGUCG----UUACCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.