miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11571 5' -55.9 NC_003085.1 + 40995 0.66 0.667324
Target:  5'- --aGGGCUGGcCCAGCgGCGucGUcaucGCCg -3'
miRNA:   3'- cagCCCGACC-GGUUGaUGCucUA----CGG- -5'
11571 5' -55.9 NC_003085.1 + 11664 0.66 0.656276
Target:  5'- -cCGGG-UGGCCGaggaggugggGCUGUGAGuUGCCg -3'
miRNA:   3'- caGCCCgACCGGU----------UGAUGCUCuACGG- -5'
11571 5' -55.9 NC_003085.1 + 36922 0.66 0.656276
Target:  5'- -cCGGGUUGccGCCAgGCaGCGuguAGGUGCCa -3'
miRNA:   3'- caGCCCGAC--CGGU-UGaUGC---UCUACGG- -5'
11571 5' -55.9 NC_003085.1 + 41885 0.66 0.656276
Target:  5'- cUUGGGCgGcGCCGACaugcGCGAGccuGUGCUg -3'
miRNA:   3'- cAGCCCGaC-CGGUUGa---UGCUC---UACGG- -5'
11571 5' -55.9 NC_003085.1 + 24379 0.66 0.645206
Target:  5'- -cCGGGCcaucaaUGGCCugg-ACGGGGccgUGCCg -3'
miRNA:   3'- caGCCCG------ACCGGuugaUGCUCU---ACGG- -5'
11571 5' -55.9 NC_003085.1 + 41057 0.66 0.645206
Target:  5'- -gCGGGCUGcuaCgCGACUGgGGGcUGCCg -3'
miRNA:   3'- caGCCCGACc--G-GUUGAUgCUCuACGG- -5'
11571 5' -55.9 NC_003085.1 + 30207 0.66 0.634124
Target:  5'- -gUGGGCUgcuggGGCCGGCgGCG-GAUGgCg -3'
miRNA:   3'- caGCCCGA-----CCGGUUGaUGCuCUACgG- -5'
11571 5' -55.9 NC_003085.1 + 14436 0.66 0.634124
Target:  5'- --aGGGCUGGCCcuCUACGGcuaucGUCg -3'
miRNA:   3'- cagCCCGACCGGuuGAUGCUcua--CGG- -5'
11571 5' -55.9 NC_003085.1 + 28995 0.66 0.633016
Target:  5'- aGUUGGGgcaugcagacgucCUucaacGGCCcGCUGgGGGAUGCCu -3'
miRNA:   3'- -CAGCCC-------------GA-----CCGGuUGAUgCUCUACGG- -5'
11571 5' -55.9 NC_003085.1 + 43772 0.66 0.633016
Target:  5'- -gCGGGCUuggacucaacaccGGCCAGCgucAUGAGcGUGUCc -3'
miRNA:   3'- caGCCCGA-------------CCGGUUGa--UGCUC-UACGG- -5'
11571 5' -55.9 NC_003085.1 + 3266 0.66 0.62304
Target:  5'- aUCGGGCcagGGCCc---GCGAGAggacgGCUa -3'
miRNA:   3'- cAGCCCGa--CCGGuugaUGCUCUa----CGG- -5'
11571 5' -55.9 NC_003085.1 + 34945 0.66 0.611964
Target:  5'- -gCGGaguuGCUGGCCGGCg--GAGgcGCCu -3'
miRNA:   3'- caGCC----CGACCGGUUGaugCUCuaCGG- -5'
11571 5' -55.9 NC_003085.1 + 17984 0.66 0.611964
Target:  5'- -gCGGGCcgcagGGCacggAGCUGCGAGA-GCg -3'
miRNA:   3'- caGCCCGa----CCGg---UUGAUGCUCUaCGg -5'
11571 5' -55.9 NC_003085.1 + 6949 0.67 0.600906
Target:  5'- -cUGGGC-GGUCGACUuCGGcagcGAUGCCc -3'
miRNA:   3'- caGCCCGaCCGGUUGAuGCU----CUACGG- -5'
11571 5' -55.9 NC_003085.1 + 20419 0.67 0.589875
Target:  5'- --aGGGCUGGgcCCAACgcuggcaggAgGAGAUGUCc -3'
miRNA:   3'- cagCCCGACC--GGUUGa--------UgCUCUACGG- -5'
11571 5' -55.9 NC_003085.1 + 40875 0.67 0.589875
Target:  5'- -cCGGGacgcgcgUGGCCuuggGCgcCGGGGUGCCg -3'
miRNA:   3'- caGCCCg------ACCGGu---UGauGCUCUACGG- -5'
11571 5' -55.9 NC_003085.1 + 47878 0.67 0.56793
Target:  5'- cGUCuGGGCUGGCCAAUcca-GGAUuGUCg -3'
miRNA:   3'- -CAG-CCCGACCGGUUGaugcUCUA-CGG- -5'
11571 5' -55.9 NC_003085.1 + 16983 0.67 0.56793
Target:  5'- -aCGGGCgggGGCUgGGgUGCGAGGUGgCu -3'
miRNA:   3'- caGCCCGa--CCGG-UUgAUGCUCUACgG- -5'
11571 5' -55.9 NC_003085.1 + 44664 0.67 0.546196
Target:  5'- -cCGGGCUuugGGCCcguccugGCG-GAUGCCa -3'
miRNA:   3'- caGCCCGA---CCGGuuga---UGCuCUACGG- -5'
11571 5' -55.9 NC_003085.1 + 47053 0.68 0.539726
Target:  5'- aGUUGGGCgaaacgcucaaggcgUGGCUGACggACGGuGUGCCc -3'
miRNA:   3'- -CAGCCCG---------------ACCGGUUGa-UGCUcUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.