miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11573 3' -54.6 NC_003085.1 + 39098 0.66 0.746586
Target:  5'- -----cUCGcccacgcauGCCGUCGCCUCCUCc-- -3'
miRNA:   3'- agaagaAGC---------UGGCAGCGGAGGAGcag -5'
11573 3' -54.6 NC_003085.1 + 29577 0.66 0.746586
Target:  5'- gUCUUCggCGGCCucaugaauGUCGCCUCUaCGc- -3'
miRNA:   3'- -AGAAGaaGCUGG--------CAGCGGAGGaGCag -5'
11573 3' -54.6 NC_003085.1 + 43144 0.66 0.736062
Target:  5'- uUCUUCcUCGGCCGU-GUCUCCaCG-Ca -3'
miRNA:   3'- -AGAAGaAGCUGGCAgCGGAGGaGCaG- -5'
11573 3' -54.6 NC_003085.1 + 7599 0.67 0.671106
Target:  5'- -----cUCGGcCCG-CGCgUCCUCGUCg -3'
miRNA:   3'- agaagaAGCU-GGCaGCGgAGGAGCAG- -5'
11573 3' -54.6 NC_003085.1 + 47154 0.68 0.593765
Target:  5'- gUCUUCUU--GCCGUUGaCCUCCUCc-- -3'
miRNA:   3'- -AGAAGAAgcUGGCAGC-GGAGGAGcag -5'
11573 3' -54.6 NC_003085.1 + 23015 0.69 0.571821
Target:  5'- cCggCUUCG-CCGUCGCCgucgacgcggCCUCGg- -3'
miRNA:   3'- aGaaGAAGCuGGCAGCGGa---------GGAGCag -5'
11573 3' -54.6 NC_003085.1 + 44455 0.7 0.507425
Target:  5'- gUCUUC-UCGGCCugcGUCGUCUCacaCGUCa -3'
miRNA:   3'- -AGAAGaAGCUGG---CAGCGGAGga-GCAG- -5'
11573 3' -54.6 NC_003085.1 + 40617 0.7 0.476381
Target:  5'- cCUgugCUgaCGGCCGcUGCCgUCCUCGUCg -3'
miRNA:   3'- aGAa--GAa-GCUGGCaGCGG-AGGAGCAG- -5'
11573 3' -54.6 NC_003085.1 + 22887 0.71 0.446308
Target:  5'- aUCggagUCgg-GGCCGUCGCCUCCUgGg- -3'
miRNA:   3'- -AGa---AGaagCUGGCAGCGGAGGAgCag -5'
11573 3' -54.6 NC_003085.1 + 25689 0.73 0.32953
Target:  5'- ---cCUUCG-UCGUCuCCUCCUCGUCg -3'
miRNA:   3'- agaaGAAGCuGGCAGcGGAGGAGCAG- -5'
11573 3' -54.6 NC_003085.1 + 26606 1.1 0.001003
Target:  5'- cUCUUCUUCGACCGUCGCCUCCUCGUCu -3'
miRNA:   3'- -AGAAGAAGCUGGCAGCGGAGGAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.