miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11573 5' -52.8 NC_003085.1 + 15224 0.68 0.714048
Target:  5'- uGGGC-GAGGUGGacuUGCGCCAacucuGGGa -3'
miRNA:   3'- gUUUGaCUCCACCguuGCGCGGU-----UCC- -5'
11573 5' -52.8 NC_003085.1 + 42715 0.68 0.709639
Target:  5'- -uGGCUaugGAGGUGGCGcgacgacgaggggaACGCcgcgaaugucuccGCCGAGGg -3'
miRNA:   3'- guUUGA---CUCCACCGU--------------UGCG-------------CGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 20384 0.68 0.703002
Target:  5'- cCAGGgUGaAGGUGGCGgGCGCGUUggGc -3'
miRNA:   3'- -GUUUgAC-UCCACCGU-UGCGCGGuuCc -5'
11573 5' -52.8 NC_003085.1 + 4994 0.68 0.680701
Target:  5'- uCAGACUGAGGcGGCAGCccucgcaaGUGUCAGc- -3'
miRNA:   3'- -GUUUGACUCCaCCGUUG--------CGCGGUUcc -5'
11573 5' -52.8 NC_003085.1 + 32835 0.68 0.669472
Target:  5'- -uGAUUGGGGcccgagaGGCcGCGCGCCGcGGg -3'
miRNA:   3'- guUUGACUCCa------CCGuUGCGCGGUuCC- -5'
11573 5' -52.8 NC_003085.1 + 21254 0.69 0.646914
Target:  5'- gCGAACUGgacgacggacaAGGUGGUGcCGCGCCcAGa -3'
miRNA:   3'- -GUUUGAC-----------UCCACCGUuGCGCGGuUCc -5'
11573 5' -52.8 NC_003085.1 + 13811 0.69 0.645784
Target:  5'- --uGCgugGAGGUGGCGccaugacgugcagACGCcGCCcAGGg -3'
miRNA:   3'- guuUGa--CUCCACCGU-------------UGCG-CGGuUCC- -5'
11573 5' -52.8 NC_003085.1 + 27547 0.69 0.635608
Target:  5'- aCAGGCcgacGAGGUGGCcucccgcacgaaacuGCGCGCCcauuucgAAGGg -3'
miRNA:   3'- -GUUUGa---CUCCACCGu--------------UGCGCGG-------UUCC- -5'
11573 5' -52.8 NC_003085.1 + 30696 0.69 0.612996
Target:  5'- --uGCUGAGGaGGCGAaGCGgCgCAAGGg -3'
miRNA:   3'- guuUGACUCCaCCGUUgCGC-G-GUUCC- -5'
11573 5' -52.8 NC_003085.1 + 3381 0.71 0.545886
Target:  5'- gAGAcCUGGGcuGUGGCGACugaGCGCCgAAGGg -3'
miRNA:   3'- gUUU-GACUC--CACCGUUG---CGCGG-UUCC- -5'
11573 5' -52.8 NC_003085.1 + 40508 0.71 0.534901
Target:  5'- aGGGCUGGacGGcggcaGGCAGCGCGCCuccgAAGGu -3'
miRNA:   3'- gUUUGACU--CCa----CCGUUGCGCGG----UUCC- -5'
11573 5' -52.8 NC_003085.1 + 48527 0.71 0.488655
Target:  5'- aAGGCUGAGGUGGCcuaugcuCGCgGCCucgccguccaugcgGAGGa -3'
miRNA:   3'- gUUUGACUCCACCGuu-----GCG-CGG--------------UUCC- -5'
11573 5' -52.8 NC_003085.1 + 7336 0.72 0.460592
Target:  5'- -cGGCUGAGGacgcgGGCuacACGCGCCccuGGGc -3'
miRNA:   3'- guUUGACUCCa----CCGu--UGCGCGGu--UCC- -5'
11573 5' -52.8 NC_003085.1 + 16333 0.73 0.430443
Target:  5'- gCGGGCguccugGAGGcGGCGGCGCaGCaCGAGGa -3'
miRNA:   3'- -GUUUGa-----CUCCaCCGUUGCG-CG-GUUCC- -5'
11573 5' -52.8 NC_003085.1 + 12743 0.74 0.364857
Target:  5'- gGGGCcgGAGGUGGU-GCGUGUCGAGGu -3'
miRNA:   3'- gUUUGa-CUCCACCGuUGCGCGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 47386 0.76 0.262405
Target:  5'- --cGCUGGagauGGUGGaCAACGuCGCCAAGGc -3'
miRNA:   3'- guuUGACU----CCACC-GUUGC-GCGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 17420 0.78 0.211795
Target:  5'- --cACUGAGGUGGCu---CGCCAGGGu -3'
miRNA:   3'- guuUGACUCCACCGuugcGCGGUUCC- -5'
11573 5' -52.8 NC_003085.1 + 26640 1.11 0.001063
Target:  5'- uCAAACUGAGGUGGCAACGCGCCAAGGg -3'
miRNA:   3'- -GUUUGACUCCACCGUUGCGCGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.