miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11574 5' -59.6 NC_003085.1 + 37526 0.66 0.469103
Target:  5'- uUCGUgaaUGCGGugGCggGCGCGGGguugGCg -3'
miRNA:   3'- -AGCA---GCGUCugCGggUGCGUCCa---CGa -5'
11574 5' -59.6 NC_003085.1 + 20237 0.66 0.469103
Target:  5'- aCGUCGCcaccuuCGCCCAgguggcgcaguCGCuGGUGCc -3'
miRNA:   3'- aGCAGCGucu---GCGGGU-----------GCGuCCACGa -5'
11574 5' -59.6 NC_003085.1 + 17295 0.66 0.466145
Target:  5'- -aGUCGCAGcgagucuugguacaGCGCCCAgGCcucGGUGg- -3'
miRNA:   3'- agCAGCGUC--------------UGCGGGUgCGu--CCACga -5'
11574 5' -59.6 NC_003085.1 + 24450 0.66 0.45928
Target:  5'- gCG-CGCuGugGCCCuucuggcgcuCGCAGGUGg- -3'
miRNA:   3'- aGCaGCGuCugCGGGu---------GCGUCCACga -5'
11574 5' -59.6 NC_003085.1 + 452 0.66 0.449569
Target:  5'- aCGgCGCGGagggccagccgGCGCUguUGCAGGUGCc -3'
miRNA:   3'- aGCaGCGUC-----------UGCGGguGCGUCCACGa -5'
11574 5' -59.6 NC_003085.1 + 17913 0.66 0.439971
Target:  5'- gCGUCGUAGacgggugccuGCGCCCAgCGC-GGcGCUc -3'
miRNA:   3'- aGCAGCGUC----------UGCGGGU-GCGuCCaCGA- -5'
11574 5' -59.6 NC_003085.1 + 37127 0.66 0.430492
Target:  5'- aCGUCGUcGGCGCCaGCGCGguacaggccGGUGUc -3'
miRNA:   3'- aGCAGCGuCUGCGGgUGCGU---------CCACGa -5'
11574 5' -59.6 NC_003085.1 + 39108 0.66 0.421133
Target:  5'- aCG-CGCAGcgcuCGCCCACGCA--UGCc -3'
miRNA:   3'- aGCaGCGUCu---GCGGGUGCGUccACGa -5'
11574 5' -59.6 NC_003085.1 + 46937 0.66 0.421133
Target:  5'- uUCGgcgcgCGCAGGgGCCgACGCGGGc--- -3'
miRNA:   3'- -AGCa----GCGUCUgCGGgUGCGUCCacga -5'
11574 5' -59.6 NC_003085.1 + 6631 0.67 0.411898
Target:  5'- cCGgCGcCGGACGUgaGCGCAaGGUGCUg -3'
miRNA:   3'- aGCaGC-GUCUGCGggUGCGU-CCACGA- -5'
11574 5' -59.6 NC_003085.1 + 10766 0.67 0.402789
Target:  5'- --cUCGCGGGC-CgCGCGCAGG-GCUg -3'
miRNA:   3'- agcAGCGUCUGcGgGUGCGUCCaCGA- -5'
11574 5' -59.6 NC_003085.1 + 38152 0.67 0.402789
Target:  5'- gCGUuggUGguGGCGCUCcccgccgcgGCGCAGGUGUUc -3'
miRNA:   3'- aGCA---GCguCUGCGGG---------UGCGUCCACGA- -5'
11574 5' -59.6 NC_003085.1 + 23281 0.67 0.402789
Target:  5'- cUCGUCGCGcaaauCGUCCACGgCuaugGGGUGCc -3'
miRNA:   3'- -AGCAGCGUcu---GCGGGUGC-G----UCCACGa -5'
11574 5' -59.6 NC_003085.1 + 15371 0.67 0.393809
Target:  5'- -aGUgGCAGACGCggAUGCAGGaGCg -3'
miRNA:   3'- agCAgCGUCUGCGggUGCGUCCaCGa -5'
11574 5' -59.6 NC_003085.1 + 45808 0.67 0.38496
Target:  5'- aCGaCGCAGGCagcaCCCGCGCAGGa--- -3'
miRNA:   3'- aGCaGCGUCUGc---GGGUGCGUCCacga -5'
11574 5' -59.6 NC_003085.1 + 19894 0.67 0.38496
Target:  5'- gUUGUUGCGguaguggucgacGAUGUCCACGCcgccGGUGCg -3'
miRNA:   3'- -AGCAGCGU------------CUGCGGGUGCGu---CCACGa -5'
11574 5' -59.6 NC_003085.1 + 3549 0.67 0.376244
Target:  5'- gUCGaCGCAGACGUCgC-CGUgauGGUGCUc -3'
miRNA:   3'- -AGCaGCGUCUGCGG-GuGCGu--CCACGA- -5'
11574 5' -59.6 NC_003085.1 + 19925 0.67 0.367661
Target:  5'- cUGcCGCAcGACGCCCGCGCcaagacgcuGGUGaCg -3'
miRNA:   3'- aGCaGCGU-CUGCGGGUGCGu--------CCAC-Ga -5'
11574 5' -59.6 NC_003085.1 + 14676 0.68 0.359215
Target:  5'- uUCGaCGCggcGGACGCaCCACGagacGGUGCa -3'
miRNA:   3'- -AGCaGCG---UCUGCG-GGUGCgu--CCACGa -5'
11574 5' -59.6 NC_003085.1 + 2273 0.68 0.359215
Target:  5'- cUCGUCGCGGACuUCUuCGCGGGcuccgGCa -3'
miRNA:   3'- -AGCAGCGUCUGcGGGuGCGUCCa----CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.