miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11576 3' -59.9 NC_003085.1 + 16373 0.66 0.409428
Target:  5'- aGGCauuccaGGCGCGgGCaaaguuGGCAGGUGUc -3'
miRNA:   3'- -CCG------UCGCGCgCGgucu--UCGUCCACGu -5'
11576 3' -59.9 NC_003085.1 + 17668 0.68 0.285881
Target:  5'- aGGCgcuGGCGCugagaccgacgacGCgGCCAGGcaggAGCAGGUGUg -3'
miRNA:   3'- -CCG---UCGCG-------------CG-CGGUCU----UCGUCCACGu -5'
11576 3' -59.9 NC_003085.1 + 17977 0.74 0.126106
Target:  5'- cGGCAGCGCGgGCC----GCAGG-GCAc -3'
miRNA:   3'- -CCGUCGCGCgCGGucuuCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 18085 0.66 0.382375
Target:  5'- cGGCAGUGgGaguugGCCuGGAAGCGGcUGCGc -3'
miRNA:   3'- -CCGUCGCgCg----CGG-UCUUCGUCcACGU- -5'
11576 3' -59.9 NC_003085.1 + 18331 0.71 0.1947
Target:  5'- gGGCAGCcgcaacGCGCuGCCuuacGggGC-GGUGCAg -3'
miRNA:   3'- -CCGUCG------CGCG-CGGu---CuuCGuCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 18768 0.68 0.29893
Target:  5'- aGGCGGgGCGgGCCAcuGAccggcgucacccucAGCAGGagUGCGc -3'
miRNA:   3'- -CCGUCgCGCgCGGU--CU--------------UCGUCC--ACGU- -5'
11576 3' -59.9 NC_003085.1 + 19059 0.76 0.080486
Target:  5'- cGCGGCGCGCGgCGGA-GCAGGcGCc -3'
miRNA:   3'- cCGUCGCGCGCgGUCUuCGUCCaCGu -5'
11576 3' -59.9 NC_003085.1 + 19170 0.74 0.126106
Target:  5'- aGCAGUGgGUGCCAGcgcucaguGGCAGGUGgCAc -3'
miRNA:   3'- cCGUCGCgCGCGGUCu-------UCGUCCAC-GU- -5'
11576 3' -59.9 NC_003085.1 + 22828 0.71 0.179733
Target:  5'- cGCGGCGgGCGUCGucGgcGCGGGUGUc -3'
miRNA:   3'- cCGUCGCgCGCGGU--CuuCGUCCACGu -5'
11576 3' -59.9 NC_003085.1 + 22848 0.7 0.220912
Target:  5'- cGGCAGCGaaggagaguccggcaGCGCCcacaggugguaccgAGGAGCcuGGUGCGa -3'
miRNA:   3'- -CCGUCGCg--------------CGCGG--------------UCUUCGu-CCACGU- -5'
11576 3' -59.9 NC_003085.1 + 23067 0.66 0.427166
Target:  5'- uGCGGCGCGCGCaccucuGGCugcuuggGGGUGgCAg -3'
miRNA:   3'- cCGUCGCGCGCGgucu--UCG-------UCCAC-GU- -5'
11576 3' -59.9 NC_003085.1 + 23120 0.67 0.329566
Target:  5'- aGGCGGCGCagcaccgcaagacgGCG-CAGAgcuucgAGCAGGUGg- -3'
miRNA:   3'- -CCGUCGCG--------------CGCgGUCU------UCGUCCACgu -5'
11576 3' -59.9 NC_003085.1 + 23407 0.67 0.373626
Target:  5'- cGGCGGCGCuugGCcgGCCAGA-GCGGcGUcaaGCAu -3'
miRNA:   3'- -CCGUCGCG---CG--CGGUCUuCGUC-CA---CGU- -5'
11576 3' -59.9 NC_003085.1 + 23426 0.67 0.356539
Target:  5'- uGCAGCGCuuCGCCc--AGCAGGcGCAg -3'
miRNA:   3'- cCGUCGCGc-GCGGucuUCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 24816 0.68 0.293801
Target:  5'- cGCGGCGCGCGgcuuucaaCCAGGAcGCcgAGGcGCAg -3'
miRNA:   3'- cCGUCGCGCGC--------GGUCUU-CG--UCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 26025 0.71 0.199927
Target:  5'- uGGCGaCGCuGCGCCAGcaguugaagGAGCAGG-GCGa -3'
miRNA:   3'- -CCGUcGCG-CGCGGUC---------UUCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 26934 0.68 0.286594
Target:  5'- cGGCAG-GUGCGCCuccuGAaucgaggguGGCGGGgGCAc -3'
miRNA:   3'- -CCGUCgCGCGCGGu---CU---------UCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 27099 0.68 0.293801
Target:  5'- uGGCAGCGUcgaGCGCgCAGGcacaccaaGGCccGUGCAc -3'
miRNA:   3'- -CCGUCGCG---CGCG-GUCU--------UCGucCACGU- -5'
11576 3' -59.9 NC_003085.1 + 27557 0.71 0.189594
Target:  5'- cGGCGGUGaCGuCGCCAucuGGCAGG-GCAc -3'
miRNA:   3'- -CCGUCGC-GC-GCGGUcu-UCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 28108 1.1 0.000218
Target:  5'- gGGCAGCGCGCGCCAGAAGCAGGUGCAg -3'
miRNA:   3'- -CCGUCGCGCGCGGUCUUCGUCCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.