miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11576 3' -59.9 NC_003085.1 + 24816 0.68 0.293801
Target:  5'- cGCGGCGCGCGgcuuucaaCCAGGAcGCcgAGGcGCAg -3'
miRNA:   3'- cCGUCGCGCGC--------GGUCUU-CG--UCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 22848 0.7 0.220912
Target:  5'- cGGCAGCGaaggagaguccggcaGCGCCcacaggugguaccgAGGAGCcuGGUGCGa -3'
miRNA:   3'- -CCGUCGCg--------------CGCGG--------------UCUUCGu-CCACGU- -5'
11576 3' -59.9 NC_003085.1 + 13934 0.7 0.240014
Target:  5'- cGgGGCGCGCGCCgaagaAGAAGCGGa-GCGu -3'
miRNA:   3'- cCgUCGCGCGCGG-----UCUUCGUCcaCGU- -5'
11576 3' -59.9 NC_003085.1 + 28289 0.69 0.24626
Target:  5'- aGCGGCGaGUaCCAGGccucgcAGCAGGUGCGc -3'
miRNA:   3'- cCGUCGCgCGcGGUCU------UCGUCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 45983 0.69 0.251996
Target:  5'- cGGCAGaUGCGCGCCucuccccacAGGgugacgacggccgGGCAGG-GCAu -3'
miRNA:   3'- -CCGUC-GCGCGCGG---------UCU-------------UCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 29187 0.69 0.265808
Target:  5'- uGGCAGCGC-CGCgAGGAcGCGGaGcGCAc -3'
miRNA:   3'- -CCGUCGCGcGCGgUCUU-CGUC-CaCGU- -5'
11576 3' -59.9 NC_003085.1 + 11602 0.69 0.272598
Target:  5'- gGGCAGgGCgGCGCgaAGggGCu-GUGCAg -3'
miRNA:   3'- -CCGUCgCG-CGCGg-UCuuCGucCACGU- -5'
11576 3' -59.9 NC_003085.1 + 40332 0.69 0.279526
Target:  5'- gGGCuGGCGCGUGCCucaguGGgcGguGG-GCAa -3'
miRNA:   3'- -CCG-UCGCGCGCGG-----UCuuCguCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 17668 0.68 0.285881
Target:  5'- aGGCgcuGGCGCugagaccgacgacGCgGCCAGGcaggAGCAGGUGUg -3'
miRNA:   3'- -CCG---UCGCG-------------CG-CGGUCU----UCGUCCACGu -5'
11576 3' -59.9 NC_003085.1 + 38159 0.7 0.216343
Target:  5'- uGGUGGCGCucccCGCCGcGgcGCAGGUGUu -3'
miRNA:   3'- -CCGUCGCGc---GCGGU-CuuCGUCCACGu -5'
11576 3' -59.9 NC_003085.1 + 30416 0.7 0.210746
Target:  5'- cGGCacuGGCGaGCGCCcuugcuGGAGgAGGUGCAu -3'
miRNA:   3'- -CCG---UCGCgCGCGGu-----CUUCgUCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 26025 0.71 0.199927
Target:  5'- uGGCGaCGCuGCGCCAGcaguugaagGAGCAGG-GCGa -3'
miRNA:   3'- -CCGUcGCG-CGCGGUC---------UUCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 39665 0.77 0.065921
Target:  5'- aGCGGCGCGCGCguGAgcagcAGCAGGcGCu -3'
miRNA:   3'- cCGUCGCGCGCGguCU-----UCGUCCaCGu -5'
11576 3' -59.9 NC_003085.1 + 19059 0.76 0.080486
Target:  5'- cGCGGCGCGCGgCGGA-GCAGGcGCc -3'
miRNA:   3'- cCGUCGCGCGCgGUCUuCGUCCaCGu -5'
11576 3' -59.9 NC_003085.1 + 14863 0.74 0.109429
Target:  5'- aGGC-GCGCGCGCaaggugaCGGAcgAGCAGGUGUu -3'
miRNA:   3'- -CCGuCGCGCGCG-------GUCU--UCGUCCACGu -5'
11576 3' -59.9 NC_003085.1 + 19170 0.74 0.126106
Target:  5'- aGCAGUGgGUGCCAGcgcucaguGGCAGGUGgCAc -3'
miRNA:   3'- cCGUCGCgCGCGGUCu-------UCGUCCAC-GU- -5'
11576 3' -59.9 NC_003085.1 + 17977 0.74 0.126106
Target:  5'- cGGCAGCGCGgGCC----GCAGG-GCAc -3'
miRNA:   3'- -CCGUCGCGCgCGGucuuCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 3388 0.73 0.140801
Target:  5'- gGGCuguGGCGacugaGCGCC-GAagGGCGGGUGCAg -3'
miRNA:   3'- -CCG---UCGCg----CGCGGuCU--UCGUCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 27557 0.71 0.189594
Target:  5'- cGGCGGUGaCGuCGCCAucuGGCAGG-GCAc -3'
miRNA:   3'- -CCGUCGC-GC-GCGGUcu-UCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 18331 0.71 0.1947
Target:  5'- gGGCAGCcgcaacGCGCuGCCuuacGggGC-GGUGCAg -3'
miRNA:   3'- -CCGUCG------CGCG-CGGu---CuuCGuCCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.