miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11576 3' -59.9 NC_003085.1 + 10560 0.67 0.348204
Target:  5'- uGGCAG-GCGCaagagGCgaAGGAGCGGGcGCAg -3'
miRNA:   3'- -CCGUCgCGCG-----CGg-UCUUCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 46925 0.67 0.331955
Target:  5'- aGGCGGCacagguucgGCGCGCgCAGggGCcgacgcGG-GCAc -3'
miRNA:   3'- -CCGUCG---------CGCGCG-GUCuuCGu-----CCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 23120 0.67 0.329566
Target:  5'- aGGCGGCGCagcaccgcaagacgGCG-CAGAgcuucgAGCAGGUGg- -3'
miRNA:   3'- -CCGUCGCG--------------CGCgGUCU------UCGUCCACgu -5'
11576 3' -59.9 NC_003085.1 + 11365 0.68 0.324041
Target:  5'- cGcCAGCGCGCGCUuccGAAGCcGG-GCc -3'
miRNA:   3'- cC-GUCGCGCGCGGu--CUUCGuCCaCGu -5'
11576 3' -59.9 NC_003085.1 + 37850 0.68 0.324041
Target:  5'- uGGUAGCGCuGCcugcgcuggccgGCCAGAcGUcggAGGUGCu -3'
miRNA:   3'- -CCGUCGCG-CG------------CGGUCUuCG---UCCACGu -5'
11576 3' -59.9 NC_003085.1 + 48252 0.68 0.324041
Target:  5'- aGCAGCGCgGCGCCGGGgugaGGUuGGU-CAa -3'
miRNA:   3'- cCGUCGCG-CGCGGUCU----UCGuCCAcGU- -5'
11576 3' -59.9 NC_003085.1 + 3573 0.68 0.308639
Target:  5'- gGGCGGCaaGCGCGCCucgcugccGAGGCGGcGaacugGCAg -3'
miRNA:   3'- -CCGUCG--CGCGCGGu-------CUUCGUC-Ca----CGU- -5'
11576 3' -59.9 NC_003085.1 + 14206 0.68 0.308639
Target:  5'- gGGCuGCgacaagcccGCGCGCaagCGGAAGCAGGgGCc -3'
miRNA:   3'- -CCGuCG---------CGCGCG---GUCUUCGUCCaCGu -5'
11576 3' -59.9 NC_003085.1 + 18768 0.68 0.29893
Target:  5'- aGGCGGgGCGgGCCAcuGAccggcgucacccucAGCAGGagUGCGc -3'
miRNA:   3'- -CCGUCgCGCgCGGU--CU--------------UCGUCC--ACGU- -5'
11576 3' -59.9 NC_003085.1 + 24816 0.68 0.293801
Target:  5'- cGCGGCGCGCGgcuuucaaCCAGGAcGCcgAGGcGCAg -3'
miRNA:   3'- cCGUCGCGCGC--------GGUCUU-CG--UCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 27099 0.68 0.293801
Target:  5'- uGGCAGCGUcgaGCGCgCAGGcacaccaaGGCccGUGCAc -3'
miRNA:   3'- -CCGUCGCG---CGCG-GUCU--------UCGucCACGU- -5'
11576 3' -59.9 NC_003085.1 + 26934 0.68 0.286594
Target:  5'- cGGCAG-GUGCGCCuccuGAaucgaggguGGCGGGgGCAc -3'
miRNA:   3'- -CCGUCgCGCGCGGu---CU---------UCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 17668 0.68 0.285881
Target:  5'- aGGCgcuGGCGCugagaccgacgacGCgGCCAGGcaggAGCAGGUGUg -3'
miRNA:   3'- -CCG---UCGCG-------------CG-CGGUCU----UCGUCCACGu -5'
11576 3' -59.9 NC_003085.1 + 40332 0.69 0.279526
Target:  5'- gGGCuGGCGCGUGCCucaguGGgcGguGG-GCAa -3'
miRNA:   3'- -CCG-UCGCGCGCGG-----UCuuCguCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 11714 0.69 0.272598
Target:  5'- cGGCGcaaugcccuccGCGCGCGCUGGuAGCAGccccUGCAc -3'
miRNA:   3'- -CCGU-----------CGCGCGCGGUCuUCGUCc---ACGU- -5'
11576 3' -59.9 NC_003085.1 + 11602 0.69 0.272598
Target:  5'- gGGCAGgGCgGCGCgaAGggGCu-GUGCAg -3'
miRNA:   3'- -CCGUCgCG-CGCGg-UCuuCGucCACGU- -5'
11576 3' -59.9 NC_003085.1 + 8643 0.69 0.272598
Target:  5'- cGGCGGCauGCcacgguuguuGCGgCGGGAGCGGG-GCAa -3'
miRNA:   3'- -CCGUCG--CG----------CGCgGUCUUCGUCCaCGU- -5'
11576 3' -59.9 NC_003085.1 + 29187 0.69 0.265808
Target:  5'- uGGCAGCGC-CGCgAGGAcGCGGaGcGCAc -3'
miRNA:   3'- -CCGUCGCGcGCGgUCUU-CGUC-CaCGU- -5'
11576 3' -59.9 NC_003085.1 + 12110 0.69 0.259156
Target:  5'- aGCGGCGCacgaaguCGCgCAGcaccGGCAGGUGCGc -3'
miRNA:   3'- cCGUCGCGc------GCG-GUCu---UCGUCCACGU- -5'
11576 3' -59.9 NC_003085.1 + 45983 0.69 0.251996
Target:  5'- cGGCAGaUGCGCGCCucuccccacAGGgugacgacggccgGGCAGG-GCAu -3'
miRNA:   3'- -CCGUC-GCGCGCGG---------UCU-------------UCGUCCaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.