miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
11576	5'	-56.3	NC_003085.1	+	6271	0.66	0.592475
	Target:  5'- cGCCGugGgaUGCgCUCUGuAGGGaagugGCGAa -3' miRNA:   3'- -CGGCugCg-ACGaGAGAC-UCUCa----CGCU- -5'
11576	5'	-56.3	NC_003085.1	+	18367	0.67	0.559761
	Target:  5'- gGCCGugGagucgcuguccCUGCgcgugC-CUGAGGGUGCGc -3' miRNA:   3'- -CGGCugC-----------GACGa----GaGACUCUCACGCu -5'
11576	5'	-56.3	NC_003085.1	+	9123	0.67	0.548962
	Target:  5'- uGCUGuCGCgacCUCUCUGGGAGcgGCa- -3' miRNA:   3'- -CGGCuGCGac-GAGAGACUCUCa-CGcu -5'
11576	5'	-56.3	NC_003085.1	+	49018	0.68	0.527568
	Target:  5'- gGCCGgaccggaugcGCGCUGCcCUCgcgGAGAuugGCGAa -3' miRNA:   3'- -CGGC----------UGCGACGaGAGa--CUCUca-CGCU- -5'
11576	5'	-56.3	NC_003085.1	+	467	0.68	0.489895
	Target:  5'- aGCCGGCGCUGUUgcaggugcccacgggCgaggCUGAGGGccUGCGu -3' miRNA:   3'- -CGGCUGCGACGA---------------Ga---GACUCUC--ACGCu -5'
11576	5'	-56.3	NC_003085.1	+	39980	0.69	0.435897
	Target:  5'- gGCCGACGCUGggCuUCUGcauGGGGUGUc- -3' miRNA:   3'- -CGGCUGCGACgaG-AGAC---UCUCACGcu -5'
11576	5'	-56.3	NC_003085.1	+	14722	0.69	0.416784
	Target:  5'- uGCCG-CGCUGCUUUCgucGGAGguggGCGu -3' miRNA:   3'- -CGGCuGCGACGAGAGac-UCUCa---CGCu -5'
11576	5'	-56.3	NC_003085.1	+	38302	0.7	0.371319
	Target:  5'- cGCCGACguGCUGCcgUC-GAGAGUGCa- -3' miRNA:   3'- -CGGCUG--CGACGagAGaCUCUCACGcu -5'
11576	5'	-56.3	NC_003085.1	+	49189	0.72	0.290998
	Target:  5'- uGCCGcCGCUGCUcCUCagUGAGAGgGgGAg -3' miRNA:   3'- -CGGCuGCGACGA-GAG--ACUCUCaCgCU- -5'
11576	5'	-56.3	NC_003085.1	+	28143	1.1	0.000562
	Target:  5'- gGCCGACGCUGCUCUCUGAGAGUGCGAc -3' miRNA:   3'- -CGGCUGCGACGAGAGACUCUCACGCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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