miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11577 5' -58.9 NC_003085.1 + 10937 0.66 0.438977
Target:  5'- -cGCA-UGCAcGGUGCGCGUGuuGGUGc -3'
miRNA:   3'- uaCGUcACGU-CCGCGUGUACcgCCAC- -5'
11577 5' -58.9 NC_003085.1 + 40036 0.66 0.438977
Target:  5'- -cGCGGUGacgauGGCgGCGCGcGGCGGg- -3'
miRNA:   3'- uaCGUCACgu---CCG-CGUGUaCCGCCac -5'
11577 5' -58.9 NC_003085.1 + 26939 0.66 0.407386
Target:  5'- -gGCGccgGCAGGUGCGCcuccugaaucgaggGUGGCGGg- -3'
miRNA:   3'- uaCGUca-CGUCCGCGUG--------------UACCGCCac -5'
11577 5' -58.9 NC_003085.1 + 32129 0.67 0.356308
Target:  5'- -gGUGGUGCgacggGGGCgGCugGUGGCgcGGUGg -3'
miRNA:   3'- uaCGUCACG-----UCCG-CGugUACCG--CCAC- -5'
11577 5' -58.9 NC_003085.1 + 34634 0.68 0.339485
Target:  5'- -gGCuGUGC-GGCGCACGcgGGCcggcuGGUGg -3'
miRNA:   3'- uaCGuCACGuCCGCGUGUa-CCG-----CCAC- -5'
11577 5' -58.9 NC_003085.1 + 46650 0.68 0.313004
Target:  5'- -cGCAGUGguGGCGguuuccgagaacgaUACGUGGCuguuccuagcGGUGa -3'
miRNA:   3'- uaCGUCACguCCGC--------------GUGUACCG----------CCAC- -5'
11577 5' -58.9 NC_003085.1 + 18086 0.68 0.310676
Target:  5'- -gGCAGUGgGaguuggccuggaagcGGCuGCGCAUGGCGGc- -3'
miRNA:   3'- uaCGUCACgU---------------CCG-CGUGUACCGCCac -5'
11577 5' -58.9 NC_003085.1 + 38221 0.69 0.28521
Target:  5'- -gGCucGUGCAcucucgacGGCaGCACGUcGGCGGUGg -3'
miRNA:   3'- uaCGu-CACGU--------CCG-CGUGUA-CCGCCAC- -5'
11577 5' -58.9 NC_003085.1 + 4157 0.69 0.278041
Target:  5'- -gGCgAGUGCGGGCGCuccacCAggaGGCGGa- -3'
miRNA:   3'- uaCG-UCACGUCCGCGu----GUa--CCGCCac -5'
11577 5' -58.9 NC_003085.1 + 18528 0.69 0.277332
Target:  5'- -aGguGUGCGGGCcgauugcccagaaGCACGaggUGGCGGg- -3'
miRNA:   3'- uaCguCACGUCCG-------------CGUGU---ACCGCCac -5'
11577 5' -58.9 NC_003085.1 + 8517 0.69 0.271015
Target:  5'- -cGCAccaGCGGGCGCAgGcgaaGGCGGUGa -3'
miRNA:   3'- uaCGUca-CGUCCGCGUgUa---CCGCCAC- -5'
11577 5' -58.9 NC_003085.1 + 37520 0.69 0.257395
Target:  5'- aAUGCGGUGgCGGGCGCGgGguUGGCGc-- -3'
miRNA:   3'- -UACGUCAC-GUCCGCGUgU--ACCGCcac -5'
11577 5' -58.9 NC_003085.1 + 25154 0.7 0.250796
Target:  5'- -cGCGGUGUggccGGCGaccguggcCugGUGGCGGUGg -3'
miRNA:   3'- uaCGUCACGu---CCGC--------GugUACCGCCAC- -5'
11577 5' -58.9 NC_003085.1 + 10415 0.73 0.158758
Target:  5'- -cGCGGUGCcucccgggAGGCG-ACGUGGCGGg- -3'
miRNA:   3'- uaCGUCACG--------UCCGCgUGUACCGCCac -5'
11577 5' -58.9 NC_003085.1 + 11142 0.73 0.142059
Target:  5'- -gGCGGUGCAGGC-CGagguUGGUGGUGu -3'
miRNA:   3'- uaCGUCACGUCCGcGUgu--ACCGCCAC- -5'
11577 5' -58.9 NC_003085.1 + 34926 0.83 0.026271
Target:  5'- -aGUGGUGCAGGCGCACGcGGCGGa- -3'
miRNA:   3'- uaCGUCACGUCCGCGUGUaCCGCCac -5'
11577 5' -58.9 NC_003085.1 + 28576 1.07 0.000401
Target:  5'- aAUGCAGUGCAGGCGCACAUGGCGGUGg -3'
miRNA:   3'- -UACGUCACGUCCGCGUGUACCGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.