miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11578 5' -60.7 NC_003085.1 + 49383 0.66 0.395683
Target:  5'- gCUGGGaGGUcGCCUCCcggGACGCCgacgcgacgcagcaGCCAc -3'
miRNA:   3'- -GACCCcCUA-CGGAGG---UUGCGGa-------------CGGU- -5'
11578 5' -60.7 NC_003085.1 + 25793 0.66 0.392113
Target:  5'- -gGuGGGGAcGCCgCUgaaggaGugGCCUGCCAu -3'
miRNA:   3'- gaC-CCCCUaCGGaGG------UugCGGACGGU- -5'
11578 5' -60.7 NC_003085.1 + 34812 0.66 0.383283
Target:  5'- gUGGGcGGGaGCCUUCGGCGCUgaCCGa -3'
miRNA:   3'- gACCC-CCUaCGGAGGUUGCGGacGGU- -5'
11578 5' -60.7 NC_003085.1 + 22352 0.68 0.280944
Target:  5'- aUGGaGGGAUGCCgugaGGCGCC-GCUAc -3'
miRNA:   3'- gACC-CCCUACGGagg-UUGCGGaCGGU- -5'
11578 5' -60.7 NC_003085.1 + 48571 0.69 0.260641
Target:  5'- uUGGcacGGGAUGCCccUCgGACGCCaccGCCGg -3'
miRNA:   3'- gACC---CCCUACGG--AGgUUGCGGa--CGGU- -5'
11578 5' -60.7 NC_003085.1 + 41072 0.69 0.260641
Target:  5'- aCUGGGGGcUGCCgaugagCgAGCGgaCUGCCu -3'
miRNA:   3'- -GACCCCCuACGGa-----GgUUGCg-GACGGu -5'
11578 5' -60.7 NC_003085.1 + 3411 0.69 0.254144
Target:  5'- -aGGGcGGGUGCagCCGuaucGCGCCUGCUg -3'
miRNA:   3'- gaCCC-CCUACGgaGGU----UGCGGACGGu -5'
11578 5' -60.7 NC_003085.1 + 12772 0.69 0.24155
Target:  5'- cCUGGGGuGAUGCC-CCugcCGCCguUGUCGg -3'
miRNA:   3'- -GACCCC-CUACGGaGGuu-GCGG--ACGGU- -5'
11578 5' -60.7 NC_003085.1 + 27632 0.69 0.229481
Target:  5'- cCUGGGGGGcucGCCgCCAgcgggACGCCgcaucGCCAc -3'
miRNA:   3'- -GACCCCCUa--CGGaGGU-----UGCGGa----CGGU- -5'
11578 5' -60.7 NC_003085.1 + 41150 0.71 0.176578
Target:  5'- gCUGGccGGAUGCCUCCAACGgCUaCCu -3'
miRNA:   3'- -GACCc-CCUACGGAGGUUGCgGAcGGu -5'
11578 5' -60.7 NC_003085.1 + 40858 0.71 0.17193
Target:  5'- uUGGgcgccGGGGUGCCguccgCCAACGUCaGCCAc -3'
miRNA:   3'- gACC-----CCCUACGGa----GGUUGCGGaCGGU- -5'
11578 5' -60.7 NC_003085.1 + 20802 0.74 0.102295
Target:  5'- cCUGGaGGGcguaCUCCAGCGCCUGCUg -3'
miRNA:   3'- -GACC-CCCuacgGAGGUUGCGGACGGu -5'
11578 5' -60.7 NC_003085.1 + 39763 0.76 0.073029
Target:  5'- -cGGcGGaGAgacgaGCCUCCAGCGCCUGCUg -3'
miRNA:   3'- gaCC-CC-CUa----CGGAGGUUGCGGACGGu -5'
11578 5' -60.7 NC_003085.1 + 29027 0.94 0.003081
Target:  5'- gCUGGGGGAUGCCUCCAACGCCguccagcagcaguugGCCAc -3'
miRNA:   3'- -GACCCCCUACGGAGGUUGCGGa--------------CGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.