miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11579 3' -54.6 NC_003085.1 + 9967 0.67 0.621977
Target:  5'- cCCGGAagaagCGGCCAGCuucCGCuGACGGc -3'
miRNA:   3'- aGGCUUaa---GCCGGUCGuc-GCG-UUGCU- -5'
11579 3' -54.6 NC_003085.1 + 34707 0.67 0.621977
Target:  5'- gCCGGuugcaUGGCCacGGCGGCGCGugGc -3'
miRNA:   3'- aGGCUuaa--GCCGG--UCGUCGCGUugCu -5'
11579 3' -54.6 NC_003085.1 + 39619 0.67 0.621977
Target:  5'- aCCGAGcaggUGGCCgcaggAGUGGCGCAACu- -3'
miRNA:   3'- aGGCUUaa--GCCGG-----UCGUCGCGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 42867 0.68 0.599656
Target:  5'- cCCGGcc-CGGCCGGgGGCGUGuCGAg -3'
miRNA:   3'- aGGCUuaaGCCGGUCgUCGCGUuGCU- -5'
11579 3' -54.6 NC_003085.1 + 26810 0.68 0.599656
Target:  5'- aCgGGAUUCGGCCAGUgaugccccuGCGCGccagGCGu -3'
miRNA:   3'- aGgCUUAAGCCGGUCGu--------CGCGU----UGCu -5'
11579 3' -54.6 NC_003085.1 + 31137 0.68 0.57745
Target:  5'- gCCGAGUUCGuGC--GUAGCGCGGCc- -3'
miRNA:   3'- aGGCUUAAGC-CGguCGUCGCGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 10551 0.68 0.576343
Target:  5'- gCCGcgcagcaggUCGGCCAGCcgaggggcgccaaAGCGCcGCGGa -3'
miRNA:   3'- aGGCuua------AGCCGGUCG-------------UCGCGuUGCU- -5'
11579 3' -54.6 NC_003085.1 + 8065 0.68 0.566412
Target:  5'- aCCGAGUcaggcaUGGCCGGUacaugagcggAGCGCAACa- -3'
miRNA:   3'- aGGCUUAa-----GCCGGUCG----------UCGCGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 23416 0.68 0.566412
Target:  5'- cUCGg---CGGCCGGCGGCGCuuggccggccagAGCGGc -3'
miRNA:   3'- aGGCuuaaGCCGGUCGUCGCG------------UUGCU- -5'
11579 3' -54.6 NC_003085.1 + 41571 0.69 0.555429
Target:  5'- gCCGAugaagUCgGGCCgguAGCAGCGCuggcGCGGu -3'
miRNA:   3'- aGGCUua---AG-CCGG---UCGUCGCGu---UGCU- -5'
11579 3' -54.6 NC_003085.1 + 21473 0.69 0.544509
Target:  5'- gCCGAcaagggCGGCCugcGCGGCGUggUGGa -3'
miRNA:   3'- aGGCUuaa---GCCGGu--CGUCGCGuuGCU- -5'
11579 3' -54.6 NC_003085.1 + 33280 0.69 0.544509
Target:  5'- gCCGAGUgccUCGGCCAacGCcuucuGGCGCAAUc- -3'
miRNA:   3'- aGGCUUA---AGCCGGU--CG-----UCGCGUUGcu -5'
11579 3' -54.6 NC_003085.1 + 37185 0.69 0.53366
Target:  5'- uUCaCGGGgaCGGCCAGUuucacGGCGcCAGCGGc -3'
miRNA:   3'- -AG-GCUUaaGCCGGUCG-----UCGC-GUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 11981 0.69 0.522888
Target:  5'- -gCGGAUugguccucUUGGCCuGCGGCaGCAGCGGc -3'
miRNA:   3'- agGCUUA--------AGCCGGuCGUCG-CGUUGCU- -5'
11579 3' -54.6 NC_003085.1 + 5514 0.69 0.521816
Target:  5'- aUCCGGGagCGGUCAuccaugaccgagcGCAGCGUGACGc -3'
miRNA:   3'- -AGGCUUaaGCCGGU-------------CGUCGCGUUGCu -5'
11579 3' -54.6 NC_003085.1 + 45833 0.69 0.501606
Target:  5'- gUCCcuc-UCGGCCAGcCAGuCGCGGCGc -3'
miRNA:   3'- -AGGcuuaAGCCGGUC-GUC-GCGUUGCu -5'
11579 3' -54.6 NC_003085.1 + 34450 0.69 0.501606
Target:  5'- -gCGAcgUCGGCCAGCaugAGCGUcucuggGACGc -3'
miRNA:   3'- agGCUuaAGCCGGUCG---UCGCG------UUGCu -5'
11579 3' -54.6 NC_003085.1 + 48723 0.7 0.491108
Target:  5'- aCCGGAaggacccagUCGGCCuGUGGCGCAAggUGAa -3'
miRNA:   3'- aGGCUUa--------AGCCGGuCGUCGCGUU--GCU- -5'
11579 3' -54.6 NC_003085.1 + 29992 0.7 0.480713
Target:  5'- aCCGGAUggggagCGGCCcugGGCGGCcuugGCGACGu -3'
miRNA:   3'- aGGCUUAa-----GCCGG---UCGUCG----CGUUGCu -5'
11579 3' -54.6 NC_003085.1 + 7052 0.7 0.470427
Target:  5'- gUCCGAAg-CGGCCGG-AGC-CAACGGa -3'
miRNA:   3'- -AGGCUUaaGCCGGUCgUCGcGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.