Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11580 | 5' | -63.1 | NC_003085.1 | + | 29956 | 1.07 | 0.000187 |
Target: 5'- cAGGCCCUCCAGCAGCCCUCCGGCAAGc -3' miRNA: 3'- -UCCGGGAGGUCGUCGGGAGGCCGUUC- -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 48540 | 0.66 | 0.299329 |
Target: 5'- cGGGCCUUCCAGUccucCUCUcCCGaGCGGGu -3' miRNA: 3'- -UCCGGGAGGUCGuc--GGGA-GGC-CGUUC- -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 652 | 0.66 | 0.292159 |
Target: 5'- gAGGCgCUCgAGCAccGCCCggacgucgCCGGCc-- -3' miRNA: 3'- -UCCGgGAGgUCGU--CGGGa-------GGCCGuuc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 41762 | 0.66 | 0.285124 |
Target: 5'- -cGCCCggCCAGCcuggaAGCCCagCCGGUAc- -3' miRNA: 3'- ucCGGGa-GGUCG-----UCGGGa-GGCCGUuc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 11987 | 0.66 | 0.27618 |
Target: 5'- uGGUCCUCuuggccugcggcagCAGCGGCCUgacgCUGGCGc- -3' miRNA: 3'- uCCGGGAG--------------GUCGUCGGGa---GGCCGUuc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 30320 | 0.66 | 0.271458 |
Target: 5'- uGGCCaC-CCAGCGGgCC-CUGGCGGa -3' miRNA: 3'- uCCGG-GaGGUCGUCgGGaGGCCGUUc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 37195 | 0.66 | 0.268788 |
Target: 5'- cGGCCaguuucacggcgCCAGCGGCCUucaauUCUGGCGGc -3' miRNA: 3'- uCCGGga----------GGUCGUCGGG-----AGGCCGUUc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 19678 | 0.67 | 0.258322 |
Target: 5'- cGGCgaCCUCCuGGCGGCCCUggaGGCGc- -3' miRNA: 3'- uCCG--GGAGG-UCGUCGGGAgg-CCGUuc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 23635 | 0.67 | 0.239599 |
Target: 5'- aAGGUgCUUCAGCAGCgCgagcaggCCGcGCAGGc -3' miRNA: 3'- -UCCGgGAGGUCGUCGgGa------GGC-CGUUC- -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 19012 | 0.68 | 0.216413 |
Target: 5'- cGGGCCCguugguagCGGCaAGUCCUCUGGCu-- -3' miRNA: 3'- -UCCGGGag------GUCG-UCGGGAGGCCGuuc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 43642 | 0.76 | 0.05099 |
Target: 5'- gAGGCcauccgCCUCCAGCAGCCCggggGGCGGGg -3' miRNA: 3'- -UCCG------GGAGGUCGUCGGGagg-CCGUUC- -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 23695 | 0.73 | 0.08686 |
Target: 5'- cGGGCCCgCgCAGCAGCcuCCUCCGuCAAGa -3' miRNA: 3'- -UCCGGGaG-GUCGUCG--GGAGGCcGUUC- -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 27544 | 0.71 | 0.114392 |
Target: 5'- uGGCCauCUCCGGCGGCggugacgucgCCaUCUGGCAGGg -3' miRNA: 3'- uCCGG--GAGGUCGUCG----------GG-AGGCCGUUC- -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 43495 | 0.71 | 0.12413 |
Target: 5'- cGGCCCcaccgccUCCAGCAGCCCggcguggacgggaaCGGCGc- -3' miRNA: 3'- uCCGGG-------AGGUCGUCGGGag------------GCCGUuc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 40296 | 0.7 | 0.153966 |
Target: 5'- cGGCCUgggCAGCGucGCCCUcuaccucgCCGGCAAGg -3' miRNA: 3'- uCCGGGag-GUCGU--CGGGA--------GGCCGUUC- -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 40968 | 0.69 | 0.17121 |
Target: 5'- uGGCCCcgCCAGC-GCUCgcaagCGGCAAGg -3' miRNA: 3'- uCCGGGa-GGUCGuCGGGag---GCCGUUC- -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 19587 | 0.72 | 0.099459 |
Target: 5'- uGGGCUgCUCgAaaagcucGUAGCCCUCCGGCAAu -3' miRNA: 3'- -UCCGG-GAGgU-------CGUCGGGAGGCCGUUc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 41333 | 0.66 | 0.285124 |
Target: 5'- uGGCCCgCCAGUccAGCCUgCCGcGCGu- -3' miRNA: 3'- uCCGGGaGGUCG--UCGGGaGGC-CGUuc -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 41001 | 0.66 | 0.278224 |
Target: 5'- gAGGCaCCUCuCGGCgcgcggcgAGCUCgUCaCGGCAGGu -3' miRNA: 3'- -UCCG-GGAG-GUCG--------UCGGG-AG-GCCGUUC- -5' |
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11580 | 5' | -63.1 | NC_003085.1 | + | 10177 | 0.66 | 0.271458 |
Target: 5'- cAGGUCCaucaaCGGCGGuUCCgacgCCGGCGGGg -3' miRNA: 3'- -UCCGGGag---GUCGUC-GGGa---GGCCGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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