miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11581 3' -54.2 NC_003085.1 + 9794 0.66 0.714723
Target:  5'- gCACUcCGACUGCacggugaGUGGUucaggccagagcccGAGUUGCUGu -3'
miRNA:   3'- -GUGA-GUUGAUGg------CACCG--------------CUCAGCGAC- -5'
11581 3' -54.2 NC_003085.1 + 20240 0.67 0.696098
Target:  5'- uCGC-CAcCUucGCCcagGUGGCGcAGUCGCUGg -3'
miRNA:   3'- -GUGaGUuGA--UGG---CACCGC-UCAGCGAC- -5'
11581 3' -54.2 NC_003085.1 + 40119 0.67 0.696098
Target:  5'- -cCUCGGCUGCUGguccUGGCcgccgcgcgucuGAGUCGCUc -3'
miRNA:   3'- guGAGUUGAUGGC----ACCG------------CUCAGCGAc -5'
11581 3' -54.2 NC_003085.1 + 26900 0.67 0.685051
Target:  5'- gACUCAAC-ACCGUcucGGCGGGcagCGCc- -3'
miRNA:   3'- gUGAGUUGaUGGCA---CCGCUCa--GCGac -5'
11581 3' -54.2 NC_003085.1 + 46075 0.67 0.673952
Target:  5'- aCGCgucgCGcUUACCGacGGCGAGcCGCUGg -3'
miRNA:   3'- -GUGa---GUuGAUGGCa-CCGCUCaGCGAC- -5'
11581 3' -54.2 NC_003085.1 + 21475 0.67 0.673952
Target:  5'- uCGgaCAGCaggcgGCCGaUGGUGAGUcCGCUGg -3'
miRNA:   3'- -GUgaGUUGa----UGGC-ACCGCUCA-GCGAC- -5'
11581 3' -54.2 NC_003085.1 + 23562 0.67 0.651644
Target:  5'- uGCUCGGCgcggCGUuGCGAuGUCGCUGg -3'
miRNA:   3'- gUGAGUUGaug-GCAcCGCU-CAGCGAC- -5'
11581 3' -54.2 NC_003085.1 + 14093 0.68 0.640456
Target:  5'- aGCUCGGCaguccUACCGacucgguacgUGGCGAGuUCGCg- -3'
miRNA:   3'- gUGAGUUG-----AUGGC----------ACCGCUC-AGCGac -5'
11581 3' -54.2 NC_003085.1 + 36134 0.68 0.62926
Target:  5'- cCGCUCGG-UACa-UGGCGGGcUCGCUGa -3'
miRNA:   3'- -GUGAGUUgAUGgcACCGCUC-AGCGAC- -5'
11581 3' -54.2 NC_003085.1 + 43656 0.68 0.595729
Target:  5'- uGCgaccuCUGCCGUGGCGccgGGUCGgUGa -3'
miRNA:   3'- gUGaguu-GAUGGCACCGC---UCAGCgAC- -5'
11581 3' -54.2 NC_003085.1 + 12985 0.69 0.540596
Target:  5'- gAUUCuGGCgGCCGUGGCGgGGUCGCc- -3'
miRNA:   3'- gUGAG-UUGaUGGCACCGC-UCAGCGac -5'
11581 3' -54.2 NC_003085.1 + 30640 1.07 0.001427
Target:  5'- cCACUCAACUACCGUGGCGAGUCGCUGc -3'
miRNA:   3'- -GUGAGUUGAUGGCACCGCUCAGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.