miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11582 3' -60.1 NC_003085.1 + 4091 0.66 0.41485
Target:  5'- gGAGCGC-CCGCAc---UCGCCGCuGGa -3'
miRNA:   3'- -CUCGCGcGGCGUcguuAGUGGCGcCC- -5'
11582 3' -60.1 NC_003085.1 + 30883 0.66 0.41485
Target:  5'- -uGuCGC-CCGCGGUGAUUGCUGCGGc -3'
miRNA:   3'- cuC-GCGcGGCGUCGUUAGUGGCGCCc -5'
11582 3' -60.1 NC_003085.1 + 18969 0.66 0.40665
Target:  5'- uGGCGCGCuuccugCGCAGCAAcgccuucguccggugCAUCGuCGGGc -3'
miRNA:   3'- cUCGCGCG------GCGUCGUUa--------------GUGGC-GCCC- -5'
11582 3' -60.1 NC_003085.1 + 4015 0.66 0.405745
Target:  5'- --cCGgGCCGCGaCAacAUCGCCGCGGc -3'
miRNA:   3'- cucGCgCGGCGUcGU--UAGUGGCGCCc -5'
11582 3' -60.1 NC_003085.1 + 47380 0.66 0.405745
Target:  5'- uGAGUGCGUCGUAGCcuUCGCgCuCGGc -3'
miRNA:   3'- -CUCGCGCGGCGUCGuuAGUG-GcGCCc -5'
11582 3' -60.1 NC_003085.1 + 28202 0.67 0.396766
Target:  5'- cAGCGUcgGCCGCAGCAAcugCACCuGCu-- -3'
miRNA:   3'- cUCGCG--CGGCGUCGUUa--GUGG-CGccc -5'
11582 3' -60.1 NC_003085.1 + 9206 0.67 0.396766
Target:  5'- --cUGCGCC-CuGUGuUCGCCGCGGGa -3'
miRNA:   3'- cucGCGCGGcGuCGUuAGUGGCGCCC- -5'
11582 3' -60.1 NC_003085.1 + 46888 0.67 0.396766
Target:  5'- aGGGUGC-CCGUgggcuugugaaGGUcGUCACCGCGGc -3'
miRNA:   3'- -CUCGCGcGGCG-----------UCGuUAGUGGCGCCc -5'
11582 3' -60.1 NC_003085.1 + 12377 0.67 0.387916
Target:  5'- -uGUGCGCCGCaacccAGCGGacCACCGCGc- -3'
miRNA:   3'- cuCGCGCGGCG-----UCGUUa-GUGGCGCcc -5'
11582 3' -60.1 NC_003085.1 + 23008 0.67 0.379197
Target:  5'- -cGCGCGCCGCAGUccuggcgcccaGAgguUCGCgagcaGUGGGc -3'
miRNA:   3'- cuCGCGCGGCGUCG-----------UU---AGUGg----CGCCC- -5'
11582 3' -60.1 NC_003085.1 + 12980 0.67 0.379197
Target:  5'- uGGCG-GCCGUGGCGggGUCGCCauugcaCGGGa -3'
miRNA:   3'- cUCGCgCGGCGUCGU--UAGUGGc-----GCCC- -5'
11582 3' -60.1 NC_003085.1 + 3865 0.67 0.37061
Target:  5'- cGGCGCGUCGaCGGCGcgcccgccgucuGUCGCgGUGGc -3'
miRNA:   3'- cUCGCGCGGC-GUCGU------------UAGUGgCGCCc -5'
11582 3' -60.1 NC_003085.1 + 19061 0.67 0.37061
Target:  5'- cGGCGCGCgGCggAGCAggCGCCG-GGc -3'
miRNA:   3'- cUCGCGCGgCG--UCGUuaGUGGCgCCc -5'
11582 3' -60.1 NC_003085.1 + 42750 0.67 0.362157
Target:  5'- cGGGCGCGgUGgaCGGCAuccAUCGCCGCGu- -3'
miRNA:   3'- -CUCGCGCgGC--GUCGU---UAGUGGCGCcc -5'
11582 3' -60.1 NC_003085.1 + 12051 0.67 0.362157
Target:  5'- -cGUGCGCCGCuucGCGggCuACCcCGGGg -3'
miRNA:   3'- cuCGCGCGGCGu--CGUuaG-UGGcGCCC- -5'
11582 3' -60.1 NC_003085.1 + 11495 0.67 0.353839
Target:  5'- --aCGgGCCGUagaAGCAGcCACCGCGGcGg -3'
miRNA:   3'- cucGCgCGGCG---UCGUUaGUGGCGCC-C- -5'
11582 3' -60.1 NC_003085.1 + 40995 0.68 0.345657
Target:  5'- aGGGCuG-GCCcaGCGGCGucgucAUCGCCGUGGGc -3'
miRNA:   3'- -CUCG-CgCGG--CGUCGU-----UAGUGGCGCCC- -5'
11582 3' -60.1 NC_003085.1 + 38919 0.68 0.345657
Target:  5'- -cGCGCGCCGUcGCAGUgGgacgaCGCGGc -3'
miRNA:   3'- cuCGCGCGGCGuCGUUAgUg----GCGCCc -5'
11582 3' -60.1 NC_003085.1 + 29161 0.68 0.340813
Target:  5'- aGGCGaCGUCGCgguuggacccgcaguGGCAG-CGCCGCGaGGa -3'
miRNA:   3'- cUCGC-GCGGCG---------------UCGUUaGUGGCGC-CC- -5'
11582 3' -60.1 NC_003085.1 + 44295 0.68 0.337611
Target:  5'- --cCGuCGa-GCAGCAAUCGCCGCGaGGu -3'
miRNA:   3'- cucGC-GCggCGUCGUUAGUGGCGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.