miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11582 5' -52 NC_003085.1 + 41100 0.66 0.836431
Target:  5'- cGCCCAGgaggacgcCAGCGACgcccaCGGCGAUGAc- -3'
miRNA:   3'- uUGGGUC--------GUCGUUGa----GCUGUUGCUuc -5'
11582 5' -52 NC_003085.1 + 23371 0.66 0.826091
Target:  5'- -cUCCAGCGGCAccccauaGC-CGugGACGAu- -3'
miRNA:   3'- uuGGGUCGUCGU-------UGaGCugUUGCUuc -5'
11582 5' -52 NC_003085.1 + 10554 0.66 0.817429
Target:  5'- uGCgCCGcGCAGCAGgUCGGcCAGcCGAGGg -3'
miRNA:   3'- uUG-GGU-CGUCGUUgAGCU-GUU-GCUUC- -5'
11582 5' -52 NC_003085.1 + 44370 0.66 0.817429
Target:  5'- cACCUcGCGGCGauugcuGCUCGACGG-GAGGa -3'
miRNA:   3'- uUGGGuCGUCGU------UGAGCUGUUgCUUC- -5'
11582 5' -52 NC_003085.1 + 40715 0.66 0.817429
Target:  5'- cGGCgCAGcCAGCGuCagGGCGACGAGGa -3'
miRNA:   3'- -UUGgGUC-GUCGUuGagCUGUUGCUUC- -5'
11582 5' -52 NC_003085.1 + 19299 0.66 0.807602
Target:  5'- uGCCguCGGaCAGCGGCuugUCGACggUGAAGg -3'
miRNA:   3'- uUGG--GUC-GUCGUUG---AGCUGuuGCUUC- -5'
11582 5' -52 NC_003085.1 + 37192 0.66 0.807602
Target:  5'- uGCCCGGCgugacggugccAGC-ACUCGugAACuGGAGc -3'
miRNA:   3'- uUGGGUCG-----------UCGuUGAGCugUUG-CUUC- -5'
11582 5' -52 NC_003085.1 + 3660 0.66 0.807602
Target:  5'- --gCCAGUucGCcgcCUCGGCAGCGAGGc -3'
miRNA:   3'- uugGGUCGu-CGuu-GAGCUGUUGCUUC- -5'
11582 5' -52 NC_003085.1 + 22810 0.66 0.806609
Target:  5'- cGCCCAGgAGgcgacggcccCGACuccgauugccacgUCGGCAGCGAAGg -3'
miRNA:   3'- uUGGGUCgUC----------GUUG-------------AGCUGUUGCUUC- -5'
11582 5' -52 NC_003085.1 + 16752 0.66 0.796561
Target:  5'- cGCCCugcguGUAGCAGgUCGACAGgcagcgcccguccUGAAGg -3'
miRNA:   3'- uUGGGu----CGUCGUUgAGCUGUU-------------GCUUC- -5'
11582 5' -52 NC_003085.1 + 46695 0.67 0.787357
Target:  5'- uGCCCGGCAGCcg---GGCGAgGAGGg -3'
miRNA:   3'- uUGGGUCGUCGuugagCUGUUgCUUC- -5'
11582 5' -52 NC_003085.1 + 13304 0.67 0.781141
Target:  5'- -cCCCAGCgAGCccuucaaccaccugaAGCUCGAgAGCGAc- -3'
miRNA:   3'- uuGGGUCG-UCG---------------UUGAGCUgUUGCUuc -5'
11582 5' -52 NC_003085.1 + 32555 0.67 0.776963
Target:  5'- aAGCUCAGCgacaugAGCGAgUUGGCGgagGCGAGGg -3'
miRNA:   3'- -UUGGGUCG------UCGUUgAGCUGU---UGCUUC- -5'
11582 5' -52 NC_003085.1 + 25943 0.67 0.776963
Target:  5'- cGGCaCGGCGGCGaguuGCUCGACggUGAc- -3'
miRNA:   3'- -UUGgGUCGUCGU----UGAGCUGuuGCUuc -5'
11582 5' -52 NC_003085.1 + 17465 0.67 0.776963
Target:  5'- -uCCCGGCGGUAcGCUCGcCAacACGAGu -3'
miRNA:   3'- uuGGGUCGUCGU-UGAGCuGU--UGCUUc -5'
11582 5' -52 NC_003085.1 + 27794 0.67 0.776963
Target:  5'- cACCUcGcCAGCAACgaggcgCGACAGCGGGc -3'
miRNA:   3'- uUGGGuC-GUCGUUGa-----GCUGUUGCUUc -5'
11582 5' -52 NC_003085.1 + 9751 0.67 0.755694
Target:  5'- gGACgCCAGCcGguGCUCGACGuugGCGGc- -3'
miRNA:   3'- -UUG-GGUCGuCguUGAGCUGU---UGCUuc -5'
11582 5' -52 NC_003085.1 + 41000 0.68 0.733874
Target:  5'- uGGCCCAGCGGCGucgucaucGC-CGugGGCGucGc -3'
miRNA:   3'- -UUGGGUCGUCGU--------UGaGCugUUGCuuC- -5'
11582 5' -52 NC_003085.1 + 25988 0.68 0.733874
Target:  5'- cAACuCCGcGCGG-AGCUCGAC-ACGAAGa -3'
miRNA:   3'- -UUG-GGU-CGUCgUUGAGCUGuUGCUUC- -5'
11582 5' -52 NC_003085.1 + 29177 0.68 0.733874
Target:  5'- gGACCCgcAGUGGCAGCgccgCGAgGACGcGGa -3'
miRNA:   3'- -UUGGG--UCGUCGUUGa---GCUgUUGCuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.