Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11583 | 3' | -55.9 | NC_003085.1 | + | 458 | 0.7 | 0.399113 |
Target: 5'- cGGAGgGCCAGCcGGC-GCUGUUGCAg -3' miRNA: 3'- uCUUCaUGGUUGaCCGcCGGCAGCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 1592 | 0.7 | 0.399113 |
Target: 5'- uGGAGU-CaCGcCUGGCGGCCGUgaggCGCAc -3' miRNA: 3'- uCUUCAuG-GUuGACCGCCGGCA----GCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 2456 | 0.67 | 0.580725 |
Target: 5'- aGGGAGUACCuGCgagagcucgcgcgccGCGGCC-UCGCAc -3' miRNA: 3'- -UCUUCAUGGuUGac-------------CGCCGGcAGCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 3537 | 0.66 | 0.661623 |
Target: 5'- gAGGAGUgcgccccuuggACCAcGCUcaaGGCGGCCGggcggcaagCGCGc -3' miRNA: 3'- -UCUUCA-----------UGGU-UGA---CCGCCGGCa--------GCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 3958 | 0.68 | 0.508365 |
Target: 5'- gAGcAGUGCCAccgcgacagacgGCgGGCGcGCCGUCGaCGc -3' miRNA: 3'- -UCuUCAUGGU------------UGaCCGC-CGGCAGC-GU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 4983 | 0.7 | 0.399113 |
Target: 5'- cGAGGUGCCAcucagACUgaGGCGGCagcccUCGCAa -3' miRNA: 3'- uCUUCAUGGU-----UGA--CCGCCGgc---AGCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 9741 | 0.72 | 0.306076 |
Target: 5'- --cGGUGCuCGACguUGGCGGCCGUCcCAa -3' miRNA: 3'- ucuUCAUG-GUUG--ACCGCCGGCAGcGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 12993 | 0.71 | 0.329706 |
Target: 5'- cAGAA--AUCGAuuCUGGCGGCCGUgGCGg -3' miRNA: 3'- -UCUUcaUGGUU--GACCGCCGGCAgCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 13081 | 0.66 | 0.617225 |
Target: 5'- aAGGAGUugCAgcaggaACUGGCacGCCG-CGCu -3' miRNA: 3'- -UCUUCAugGU------UGACCGc-CGGCaGCGu -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 13849 | 0.67 | 0.595065 |
Target: 5'- gGGAAGUGCCGGaUGuGCGGCaaccCGCGc -3' miRNA: 3'- -UCUUCAUGGUUgAC-CGCCGgca-GCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 14993 | 0.83 | 0.057945 |
Target: 5'- uGGAGcGCCAcgcGCUGGCGGCCGgugCGCAa -3' miRNA: 3'- uCUUCaUGGU---UGACCGCCGGCa--GCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 19458 | 0.66 | 0.650539 |
Target: 5'- uGggGUACCGGCccacGCGGCUGcacaGCAc -3' miRNA: 3'- uCuuCAUGGUUGac--CGCCGGCag--CGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 22901 | 0.67 | 0.551197 |
Target: 5'- ----cUGCCGACgUGGCaaucggagucggGGCCGUCGCc -3' miRNA: 3'- ucuucAUGGUUG-ACCG------------CCGGCAGCGu -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 23042 | 0.66 | 0.639437 |
Target: 5'- uGGggGUggcagacuggGCCGGCUcguccGGCuucGCCGUCGCc -3' miRNA: 3'- -UCuuCA----------UGGUUGA-----CCGc--CGGCAGCGu -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 23308 | 0.66 | 0.661623 |
Target: 5'- cGcGGUGCgaAGCgcGGCGGCCGUCuggaGCAg -3' miRNA: 3'- uCuUCAUGg-UUGa-CCGCCGGCAG----CGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 23435 | 0.72 | 0.313026 |
Target: 5'- cGAAGUGCUggGGCUgcgccucGGCGGCCGgcggCGCu -3' miRNA: 3'- uCUUCAUGG--UUGA-------CCGCCGGCa---GCGu -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 25371 | 0.74 | 0.218673 |
Target: 5'- cGucGU-CCAcCUGGcCGGCCGUCGCGg -3' miRNA: 3'- uCuuCAuGGUuGACC-GCCGGCAGCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 27589 | 0.66 | 0.606133 |
Target: 5'- aGGGAGUcAUCAuGCcGGCGccGCCGUCGUAc -3' miRNA: 3'- -UCUUCA-UGGU-UGaCCGC--CGGCAGCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 28703 | 0.68 | 0.529622 |
Target: 5'- aAGggGUAUCGAaaGGcCGGCCG-CaGCAg -3' miRNA: 3'- -UCuuCAUGGUUgaCC-GCCGGCaG-CGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 30904 | 1.08 | 0.000795 |
Target: 5'- cAGAAGUACCAACUGGCGGCCGUCGCAu -3' miRNA: 3'- -UCUUCAUGGUUGACCGCCGGCAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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