Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11583 | 3' | -55.9 | NC_003085.1 | + | 36470 | 0.69 | 0.467001 |
Target: 5'- gAGGuAGUGCC-ACUGGCGGCUuuaggguugGaCGCAg -3' miRNA: 3'- -UCU-UCAUGGuUGACCGCCGG---------CaGCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 36840 | 0.69 | 0.427444 |
Target: 5'- gAGGAGUacGCCGACggcgaggccGGCGGCCGaggggagguagCGCAu -3' miRNA: 3'- -UCUUCA--UGGUUGa--------CCGCCGGCa----------GCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 458 | 0.7 | 0.399113 |
Target: 5'- cGGAGgGCCAGCcGGC-GCUGUUGCAg -3' miRNA: 3'- uCUUCaUGGUUGaCCGcCGGCAGCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 4983 | 0.7 | 0.399113 |
Target: 5'- cGAGGUGCCAcucagACUgaGGCGGCagcccUCGCAa -3' miRNA: 3'- uCUUCAUGGU-----UGA--CCGCCGgc---AGCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 1592 | 0.7 | 0.399113 |
Target: 5'- uGGAGU-CaCGcCUGGCGGCCGUgaggCGCAc -3' miRNA: 3'- uCUUCAuG-GUuGACCGCCGGCA----GCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 12993 | 0.71 | 0.329706 |
Target: 5'- cAGAA--AUCGAuuCUGGCGGCCGUgGCGg -3' miRNA: 3'- -UCUUcaUGGUU--GACCGCCGGCAgCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 23435 | 0.72 | 0.313026 |
Target: 5'- cGAAGUGCUggGGCUgcgccucGGCGGCCGgcggCGCu -3' miRNA: 3'- uCUUCAUGG--UUGA-------CCGCCGGCa---GCGu -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 9741 | 0.72 | 0.306076 |
Target: 5'- --cGGUGCuCGACguUGGCGGCCGUCcCAa -3' miRNA: 3'- ucuUCAUG-GUUG--ACCGCCGGCAGcGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 43169 | 0.73 | 0.276619 |
Target: 5'- cGgcGUGCU-GCUGGCGGCCgGUCGUu -3' miRNA: 3'- uCuuCAUGGuUGACCGCCGG-CAGCGu -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 25371 | 0.74 | 0.218673 |
Target: 5'- cGucGU-CCAcCUGGcCGGCCGUCGCGg -3' miRNA: 3'- uCuuCAuGGUuGACC-GCCGGCAGCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 14993 | 0.83 | 0.057945 |
Target: 5'- uGGAGcGCCAcgcGCUGGCGGCCGgugCGCAa -3' miRNA: 3'- uCUUCaUGGU---UGACCGCCGGCa--GCGU- -5' |
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11583 | 3' | -55.9 | NC_003085.1 | + | 30904 | 1.08 | 0.000795 |
Target: 5'- cAGAAGUACCAACUGGCGGCCGUCGCAu -3' miRNA: 3'- -UCUUCAUGGUUGACCGCCGGCAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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