miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11584 3' -57.3 NC_003085.1 + 37 0.65 0.604133
Target:  5'- gGGCGCUacGCAGGcGCUgagagagagggaaGACGUGCCGu- -3'
miRNA:   3'- -CCGUGG--UGUCC-CGAg------------CUGUACGGUgg -5'
11584 3' -57.3 NC_003085.1 + 5900 0.66 0.597604
Target:  5'- cGG-ACCuGCAGGGCU-GACGccuccccgaUGCgCACCg -3'
miRNA:   3'- -CCgUGG-UGUCCCGAgCUGU---------ACG-GUGG- -5'
11584 3' -57.3 NC_003085.1 + 14971 0.66 0.597604
Target:  5'- cGGC-CCACcuccgGGaGGCUgGACAUgGCCugUc -3'
miRNA:   3'- -CCGuGGUG-----UC-CCGAgCUGUA-CGGugG- -5'
11584 3' -57.3 NC_003085.1 + 15194 0.66 0.597604
Target:  5'- cGCACCACGcGGCgCGGCGcuCCAUCc -3'
miRNA:   3'- cCGUGGUGUcCCGaGCUGUacGGUGG- -5'
11584 3' -57.3 NC_003085.1 + 46635 0.66 0.597604
Target:  5'- cGGCugC-C-GGGCa-GACGUGUUGCCa -3'
miRNA:   3'- -CCGugGuGuCCCGagCUGUACGGUGG- -5'
11584 3' -57.3 NC_003085.1 + 26996 0.66 0.597604
Target:  5'- gGGCuACCGCGaguggugcacGGGcCUUGGUGUGCCugCg -3'
miRNA:   3'- -CCG-UGGUGU----------CCC-GAGCUGUACGGugG- -5'
11584 3' -57.3 NC_003085.1 + 20849 0.66 0.597604
Target:  5'- cGGCGCCGa---GCUCGccGCugcgGUGCCGCCc -3'
miRNA:   3'- -CCGUGGUguccCGAGC--UG----UACGGUGG- -5'
11584 3' -57.3 NC_003085.1 + 12834 0.66 0.597604
Target:  5'- gGGCAUCACcccAGGccacCUCGACAcgcaCCACCu -3'
miRNA:   3'- -CCGUGGUG---UCCc---GAGCUGUac--GGUGG- -5'
11584 3' -57.3 NC_003085.1 + 24594 0.66 0.595429
Target:  5'- cGCgACCACAcuucgucauggcGGGCUgGAUGguguugauggugGCCACCg -3'
miRNA:   3'- cCG-UGGUGU------------CCCGAgCUGUa-----------CGGUGG- -5'
11584 3' -57.3 NC_003085.1 + 25066 0.66 0.587829
Target:  5'- uGCACCGCGGacGUguccgagauguucugCGGCAggaUGCCGCCg -3'
miRNA:   3'- cCGUGGUGUCc-CGa--------------GCUGU---ACGGUGG- -5'
11584 3' -57.3 NC_003085.1 + 22183 0.66 0.586744
Target:  5'- cGGCGCC---GGGCUCuGCuggGCgGCCu -3'
miRNA:   3'- -CCGUGGuguCCCGAGcUGua-CGgUGG- -5'
11584 3' -57.3 NC_003085.1 + 18266 0.66 0.586744
Target:  5'- aGGaaaCACAGGGC--GACAgggaagaaGCCACCg -3'
miRNA:   3'- -CCgugGUGUCCCGagCUGUa-------CGGUGG- -5'
11584 3' -57.3 NC_003085.1 + 23309 0.66 0.586744
Target:  5'- gGGUGCCGCuGGagauGCUUGAC--GCCGCUc -3'
miRNA:   3'- -CCGUGGUGuCC----CGAGCUGuaCGGUGG- -5'
11584 3' -57.3 NC_003085.1 + 2323 0.66 0.586744
Target:  5'- aGGCcccCCGguGGGCa-GGCAuUGCgCACCa -3'
miRNA:   3'- -CCGu--GGUguCCCGagCUGU-ACG-GUGG- -5'
11584 3' -57.3 NC_003085.1 + 7422 0.66 0.586744
Target:  5'- cGGCGCC-CAGGGg-CG-CGUGUaGCCc -3'
miRNA:   3'- -CCGUGGuGUCCCgaGCuGUACGgUGG- -5'
11584 3' -57.3 NC_003085.1 + 37364 0.66 0.586744
Target:  5'- cGCACCGCAGGuGCgUCG-C-UGuCCGCg -3'
miRNA:   3'- cCGUGGUGUCC-CG-AGCuGuAC-GGUGg -5'
11584 3' -57.3 NC_003085.1 + 7287 0.66 0.580246
Target:  5'- cGCACCGCcGccaaGCUCGACGggaagucuccgacgGCCAUCg -3'
miRNA:   3'- cCGUGGUGuCc---CGAGCUGUa-------------CGGUGG- -5'
11584 3' -57.3 NC_003085.1 + 45983 0.66 0.580246
Target:  5'- cGGCAgaugcgcgccucuccCCACAGGGUgaCGACG-GCCGg- -3'
miRNA:   3'- -CCGU---------------GGUGUCCCGa-GCUGUaCGGUgg -5'
11584 3' -57.3 NC_003085.1 + 35825 0.66 0.575923
Target:  5'- aGCACCAcCAGuuGCUCagcgagGACAUcgGCCACCc -3'
miRNA:   3'- cCGUGGU-GUCc-CGAG------CUGUA--CGGUGG- -5'
11584 3' -57.3 NC_003085.1 + 27638 0.66 0.575923
Target:  5'- gGGCucGCCGcCAGcGGgaCGccGCAUcGCCACCg -3'
miRNA:   3'- -CCG--UGGU-GUC-CCgaGC--UGUA-CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.