miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11585 5' -65.1 NC_003085.1 + 5227 0.68 0.194303
Target:  5'- cGCGGCCCGGCaggaaGCggccuccaaCGCGAaugGGugGc -3'
miRNA:   3'- uCGCCGGGCCGg----CGa--------GCGCUg--CCugU- -5'
11585 5' -65.1 NC_003085.1 + 27338 0.68 0.194303
Target:  5'- --gGGUCCGGCUGCUgCGgCGcCGGGCu -3'
miRNA:   3'- ucgCCGGGCCGGCGA-GC-GCuGCCUGu -5'
11585 5' -65.1 NC_003085.1 + 5727 0.68 0.194303
Target:  5'- gGGCGGaCCCGGCucggguguccCGCgUCGauugggccauUGACGGACGu -3'
miRNA:   3'- -UCGCC-GGGCCG----------GCG-AGC----------GCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 11040 0.68 0.189444
Target:  5'- gAGacaGGCCCGGa--CUUGUGACGGGCu -3'
miRNA:   3'- -UCg--CCGGGCCggcGAGCGCUGCCUGu -5'
11585 5' -65.1 NC_003085.1 + 22923 0.68 0.184693
Target:  5'- gGGCGaaGCCCuccgaGGCCGCgUCGaCGGCGcGGCGa -3'
miRNA:   3'- -UCGC--CGGG-----CCGGCG-AGC-GCUGC-CUGU- -5'
11585 5' -65.1 NC_003085.1 + 1501 0.68 0.184693
Target:  5'- cGCGGCCCGuCCGg-CGCu-CGGGCAa -3'
miRNA:   3'- uCGCCGGGCcGGCgaGCGcuGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 24642 0.68 0.184223
Target:  5'- cGGCGuCCUGguugaaaGCCGCgcgcCGCGACGGGCu -3'
miRNA:   3'- -UCGCcGGGC-------CGGCGa---GCGCUGCCUGu -5'
11585 5' -65.1 NC_003085.1 + 41358 0.68 0.180046
Target:  5'- cGGCaGGCCgGGCCGCgucacccaCGUcauGACGGugGu -3'
miRNA:   3'- -UCG-CCGGgCCGGCGa-------GCG---CUGCCugU- -5'
11585 5' -65.1 NC_003085.1 + 44241 0.68 0.180046
Target:  5'- cGCuuccuGCCgGGCCGCgUCGCGcuCGGACu -3'
miRNA:   3'- uCGc----CGGgCCGGCG-AGCGCu-GCCUGu -5'
11585 5' -65.1 NC_003085.1 + 13587 0.68 0.171064
Target:  5'- cGCGGCCCGG-UGUcaUCGCGuACuGGACc -3'
miRNA:   3'- uCGCCGGGCCgGCG--AGCGC-UG-CCUGu -5'
11585 5' -65.1 NC_003085.1 + 26221 0.69 0.162484
Target:  5'- gGGCGGCgCGG-UGCgaagCGCGGCGGcCGu -3'
miRNA:   3'- -UCGCCGgGCCgGCGa---GCGCUGCCuGU- -5'
11585 5' -65.1 NC_003085.1 + 8112 0.69 0.154293
Target:  5'- cGCGGCCCGGCCuGC-CGUaGAaggccaagucccCGGGCu -3'
miRNA:   3'- uCGCCGGGCCGG-CGaGCG-CU------------GCCUGu -5'
11585 5' -65.1 NC_003085.1 + 17676 0.69 0.14995
Target:  5'- gAGCGGCCgGGCCGCuUCGCccaaccGCacgcuacuuuccgGGACGa -3'
miRNA:   3'- -UCGCCGGgCCGGCG-AGCGc-----UG-------------CCUGU- -5'
11585 5' -65.1 NC_003085.1 + 4522 0.69 0.146479
Target:  5'- aGGCGuuugaGCCCGGCUGCaUCGgCGGC-GACAa -3'
miRNA:   3'- -UCGC-----CGGGCCGGCG-AGC-GCUGcCUGU- -5'
11585 5' -65.1 NC_003085.1 + 34348 0.69 0.142708
Target:  5'- cGCGGCgCGGCgcuccaucCGCUCGuCGAgGGugAg -3'
miRNA:   3'- uCGCCGgGCCG--------GCGAGC-GCUgCCugU- -5'
11585 5' -65.1 NC_003085.1 + 18119 0.7 0.139027
Target:  5'- uGGCGGCCuacCGGUaCGUcCGCG-CGGACAa -3'
miRNA:   3'- -UCGCCGG---GCCG-GCGaGCGCuGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 45103 0.7 0.131924
Target:  5'- cGUGGUCCaGGUCGCgCGCGGCGuaGGCAu -3'
miRNA:   3'- uCGCCGGG-CCGGCGaGCGCUGC--CUGU- -5'
11585 5' -65.1 NC_003085.1 + 35388 0.7 0.128499
Target:  5'- cGGCGGaguCCGaGgCGCUCGCagauggccucGACGGACAc -3'
miRNA:   3'- -UCGCCg--GGC-CgGCGAGCG----------CUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 29000 0.7 0.128499
Target:  5'- cGUGuGCCacuucuccagCGGCuCGCgCGCGGCGGACAu -3'
miRNA:   3'- uCGC-CGG----------GCCG-GCGaGCGCUGCCUGU- -5'
11585 5' -65.1 NC_003085.1 + 5372 0.7 0.125157
Target:  5'- cGuCGG-CUGGCCGCg-GCGAUGGACGg -3'
miRNA:   3'- uC-GCCgGGCCGGCGagCGCUGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.