Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11586 | 3' | -58 | NC_003085.1 | + | 31895 | 1.09 | 0.000515 |
Target: 5'- cGAUGCCGUGCGGAACGAGGCGGACGAg -3' miRNA: 3'- -CUACGGCACGCCUUGCUCCGCCUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 17885 | 0.75 | 0.158305 |
Target: 5'- -cUGCCGcacagGCGGcacCGGGGCGGGCGGu -3' miRNA: 3'- cuACGGCa----CGCCuu-GCUCCGCCUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 15208 | 0.72 | 0.254048 |
Target: 5'- --cGCCGcgccGCGGAaguggGCGAGGUGGACu- -3' miRNA: 3'- cuaCGGCa---CGCCU-----UGCUCCGCCUGcu -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 42060 | 0.72 | 0.260566 |
Target: 5'- --aGuCCGcGCGGAGCGGGGUGaaGACGAu -3' miRNA: 3'- cuaC-GGCaCGCCUUGCUCCGC--CUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 44071 | 0.71 | 0.280937 |
Target: 5'- --gGCCcgaGUGCGGGAguugGAGGCGGACa- -3' miRNA: 3'- cuaCGG---CACGCCUUg---CUCCGCCUGcu -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 9098 | 0.71 | 0.280937 |
Target: 5'- cGGUGUgGUGUGGAagaGCcGGGCGGACu- -3' miRNA: 3'- -CUACGgCACGCCU---UGcUCCGCCUGcu -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 45121 | 0.71 | 0.288003 |
Target: 5'- --aGCCG-GCGGAG-GAGGCuGGCGAc -3' miRNA: 3'- cuaCGGCaCGCCUUgCUCCGcCUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 11587 | 0.7 | 0.349558 |
Target: 5'- --cGCCuG-GCuGGAACGGGGCaGGGCGGc -3' miRNA: 3'- cuaCGG-CaCG-CCUUGCUCCG-CCUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 5592 | 0.69 | 0.355369 |
Target: 5'- --cGCCcugGUGCGGAcgaugcugagugacGCGGuGGUGGACGGg -3' miRNA: 3'- cuaCGG---CACGCCU--------------UGCU-CCGCCUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 40767 | 0.69 | 0.366341 |
Target: 5'- --gGCCucGUGUGGcuGACGuuGGCGGACGGc -3' miRNA: 3'- cuaCGG--CACGCC--UUGCu-CCGCCUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 42440 | 0.69 | 0.374939 |
Target: 5'- cAUGCCGccgagggcaUGCGcGAGCG-GGCGG-CGAa -3' miRNA: 3'- cUACGGC---------ACGC-CUUGCuCCGCCuGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 28748 | 0.69 | 0.383672 |
Target: 5'- --cGCaccggGUGCGGGACG-GGUGGACu- -3' miRNA: 3'- cuaCGg----CACGCCUUGCuCCGCCUGcu -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 49000 | 0.68 | 0.398824 |
Target: 5'- -cUGCCcucGCGGAgauuggcgaacggcGCGAGGCGGcGCGGc -3' miRNA: 3'- cuACGGca-CGCCU--------------UGCUCCGCC-UGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 41908 | 0.68 | 0.43881 |
Target: 5'- --cGCCGgGCGGGACucauGGGGCgcuuGGGCGGc -3' miRNA: 3'- cuaCGGCaCGCCUUG----CUCCG----CCUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 30198 | 0.68 | 0.445535 |
Target: 5'- uGggGCCGgcgGCGGAugGcguccguguagaggAGGCGGcCGGc -3' miRNA: 3'- -CuaCGGCa--CGCCUugC--------------UCCGCCuGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 13676 | 0.68 | 0.448434 |
Target: 5'- cGGUGCCagaCGGAGCGAGuGCGcGACa- -3' miRNA: 3'- -CUACGGcacGCCUUGCUC-CGC-CUGcu -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 37073 | 0.68 | 0.448434 |
Target: 5'- --cGaCGUGCGGAuGC-AGGUGGACGGc -3' miRNA: 3'- cuaCgGCACGCCU-UGcUCCGCCUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 752 | 0.67 | 0.477983 |
Target: 5'- --gGCCGgacGCGGGAC-AGGUGGccgGCGAc -3' miRNA: 3'- cuaCGGCa--CGCCUUGcUCCGCC---UGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 13212 | 0.67 | 0.498206 |
Target: 5'- --gGUCGcUG-GGAACGGGGUGcGGCGAu -3' miRNA: 3'- cuaCGGC-ACgCCUUGCUCCGC-CUGCU- -5' |
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11586 | 3' | -58 | NC_003085.1 | + | 23877 | 0.66 | 0.518803 |
Target: 5'- cGGUGCU--GCGGAcuGCGAcuaccGGCcGGACGAa -3' miRNA: 3'- -CUACGGcaCGCCU--UGCU-----CCG-CCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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