miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11587 5' -54.7 NC_003085.1 + 21409 0.72 0.37479
Target:  5'- cGGCCGccuGCUgUCCGAGgcCGCGCaGAACg -3'
miRNA:   3'- aCUGGU---UGAgAGGUUC--GCGCGcCUUG- -5'
11587 5' -54.7 NC_003085.1 + 21882 0.73 0.31571
Target:  5'- aGGCCGugUCccUCCAggacuucgcGGCGCuGCGGAAUg -3'
miRNA:   3'- aCUGGUugAG--AGGU---------UCGCG-CGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 23633 0.67 0.612186
Target:  5'- aGGCCAGgUuCUCCAccucCGCGCGGGu- -3'
miRNA:   3'- aCUGGUUgA-GAGGUuc--GCGCGCCUug -5'
11587 5' -54.7 NC_003085.1 + 24326 0.69 0.491985
Target:  5'- aUGGCCAACgacaUCUCCGcGGCgcucuacgGCGaCGGGACg -3'
miRNA:   3'- -ACUGGUUG----AGAGGU-UCG--------CGC-GCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 25963 0.67 0.657039
Target:  5'- -uGCCGAggggaaugccCcCUCCGAGCaacuccGCGCGGAGCu -3'
miRNA:   3'- acUGGUU----------GaGAGGUUCG------CGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 27337 0.66 0.716839
Target:  5'- cGGCCAACaucgUCUUCGucgccgucuucaaacAGCGCGUcuggcugguGGAACg -3'
miRNA:   3'- aCUGGUUG----AGAGGU---------------UCGCGCG---------CCUUG- -5'
11587 5' -54.7 NC_003085.1 + 27592 0.67 0.64247
Target:  5'- cGGCCAGUUCggCCAccuucggccugcgcGGUGUGUGGAGCc -3'
miRNA:   3'- aCUGGUUGAGa-GGU--------------UCGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 28505 0.75 0.219269
Target:  5'- aGGCCAGCcaccgcaccUCgugCCAGacGCGCGCGGGGCu -3'
miRNA:   3'- aCUGGUUG---------AGa--GGUU--CGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 29004 0.7 0.440915
Target:  5'- -uGCCAcUUCUCCAGcggcucGCGCGCGGcgGACa -3'
miRNA:   3'- acUGGUuGAGAGGUU------CGCGCGCC--UUG- -5'
11587 5' -54.7 NC_003085.1 + 31156 0.67 0.6548
Target:  5'- cGGCCAAUcagUUCCAGGCGauaaaggguaggGCGGAAg -3'
miRNA:   3'- aCUGGUUGa--GAGGUUCGCg-----------CGCCUUg -5'
11587 5' -54.7 NC_003085.1 + 32265 1.09 0.00085
Target:  5'- cUGACCAACUCUCCAAGCGCGCGGAACu -3'
miRNA:   3'- -ACUGGUUGAGAGGUUCGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 32535 0.67 0.645834
Target:  5'- cGGCCAguaGCUCaUCCAugaGGC-CGCGGGc- -3'
miRNA:   3'- aCUGGU---UGAG-AGGU---UCGcGCGCCUug -5'
11587 5' -54.7 NC_003085.1 + 32939 0.72 0.365906
Target:  5'- cGACCGGCUCaaCAGGCGCGCcu-GCc -3'
miRNA:   3'- aCUGGUUGAGagGUUCGCGCGccuUG- -5'
11587 5' -54.7 NC_003085.1 + 35260 0.74 0.284503
Target:  5'- gGACCGGCUCUgCAGGCacuucugaaagcuGCcCGGAACa -3'
miRNA:   3'- aCUGGUUGAGAgGUUCG-------------CGcGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 35924 0.66 0.690463
Target:  5'- gGACCAACgacCUCgucuaCGAGCGCcuggcgcCGGAGCu -3'
miRNA:   3'- aCUGGUUGa--GAG-----GUUCGCGc------GCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 36244 0.68 0.600992
Target:  5'- cUGGCC-AUUCgguaUUCGAGCGCGUGGGc- -3'
miRNA:   3'- -ACUGGuUGAG----AGGUUCGCGCGCCUug -5'
11587 5' -54.7 NC_003085.1 + 36638 0.69 0.523905
Target:  5'- cGGCCAACagcgcaUCCGcccggaccgucAGgGCGUGGAGCa -3'
miRNA:   3'- aCUGGUUGag----AGGU-----------UCgCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 36941 0.72 0.348579
Target:  5'- -cACCAACUCUCUcgacaggcaGGGC-CGCGGGGCc -3'
miRNA:   3'- acUGGUUGAGAGG---------UUCGcGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 37813 0.67 0.634617
Target:  5'- cGGCCAcccggcgcaauGCcCUCCGcGCGCGCuGGuAGCa -3'
miRNA:   3'- aCUGGU-----------UGaGAGGUuCGCGCG-CC-UUG- -5'
11587 5' -54.7 NC_003085.1 + 38911 0.67 0.657039
Target:  5'- -cGCCGACUCUCgCAAG-GCGgGGuuGCc -3'
miRNA:   3'- acUGGUUGAGAG-GUUCgCGCgCCu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.