Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11587 | 5' | -54.7 | NC_003085.1 | + | 995 | 0.66 | 0.712473 |
Target: 5'- cGGCCGACgCUCCAGGacuCGCucuucGUGGAGg -3' miRNA: 3'- aCUGGUUGaGAGGUUC---GCG-----CGCCUUg -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 44329 | 0.68 | 0.567614 |
Target: 5'- cGGCCucCUCUUCGGGCGUagccuucgcccGCGGcGACg -3' miRNA: 3'- aCUGGuuGAGAGGUUCGCG-----------CGCC-UUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 8481 | 0.69 | 0.50253 |
Target: 5'- gGGCCAGCcCUUgccgcuugCGAGCGCugGCGGGGCc -3' miRNA: 3'- aCUGGUUGaGAG--------GUUCGCG--CGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 28505 | 0.75 | 0.219269 |
Target: 5'- aGGCCAGCcaccgcaccUCgugCCAGacGCGCGCGGGGCu -3' miRNA: 3'- aCUGGUUG---------AGa--GGUU--CGCGCGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 46765 | 0.66 | 0.700402 |
Target: 5'- cUGGCCGgaagcaggcagcgGCggcgCUCCAGGCG-GCGGcgaAGCg -3' miRNA: 3'- -ACUGGU-------------UGa---GAGGUUCGCgCGCC---UUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 40739 | 0.66 | 0.690463 |
Target: 5'- -cGCCGGCggCUCCGcgaGGuUGCGCGGcGCa -3' miRNA: 3'- acUGGUUGa-GAGGU---UC-GCGCGCCuUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 43136 | 0.66 | 0.679364 |
Target: 5'- cGGCCGugUCUCCAcGCaGCcguuccccaGCGGGccGCu -3' miRNA: 3'- aCUGGUugAGAGGUuCG-CG---------CGCCU--UG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 48954 | 0.66 | 0.668219 |
Target: 5'- gGGCCAAUgCUCC--GUGUGCGGcGACu -3' miRNA: 3'- aCUGGUUGaGAGGuuCGCGCGCC-UUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 41915 | 0.67 | 0.645834 |
Target: 5'- gGACCAGCg--CCGGGCGgGacucauGGGGCg -3' miRNA: 3'- aCUGGUUGagaGGUUCGCgCg-----CCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 20761 | 0.68 | 0.600992 |
Target: 5'- gGGCCAGCgcgcagCUCCGcGCGUuguccGCGGGGa -3' miRNA: 3'- aCUGGUUGa-----GAGGUuCGCG-----CGCCUUg -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 37813 | 0.67 | 0.634617 |
Target: 5'- cGGCCAcccggcgcaauGCcCUCCGcGCGCGCuGGuAGCa -3' miRNA: 3'- aCUGGU-----------UGaGAGGUuCGCGCG-CC-UUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 32535 | 0.67 | 0.645834 |
Target: 5'- cGGCCAguaGCUCaUCCAugaGGC-CGCGGGc- -3' miRNA: 3'- aCUGGU---UGAG-AGGU---UCGcGCGCCUug -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 12499 | 0.66 | 0.712473 |
Target: 5'- cGACaCAGC-CUCCucgGAGCGCaGCGGc-- -3' miRNA: 3'- aCUG-GUUGaGAGG---UUCGCG-CGCCuug -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 9081 | 0.67 | 0.623397 |
Target: 5'- cGGCCAGCg--CCAgaggcgucAGCGCcGCGGGcaGCa -3' miRNA: 3'- aCUGGUUGagaGGU--------UCGCG-CGCCU--UG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 47190 | 0.66 | 0.712473 |
Target: 5'- gGGCCuuGCUC-CCGuccAGCGCGaCGGGc- -3' miRNA: 3'- aCUGGu-UGAGaGGU---UCGCGC-GCCUug -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 19130 | 0.67 | 0.645834 |
Target: 5'- -cGCCuGCUCcgCCGcGCGCcGCGGAAUc -3' miRNA: 3'- acUGGuUGAGa-GGUuCGCG-CGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 23633 | 0.67 | 0.612186 |
Target: 5'- aGGCCAGgUuCUCCAccucCGCGCGGGu- -3' miRNA: 3'- aCUGGUUgA-GAGGUuc--GCGCGCCUug -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 36638 | 0.69 | 0.523905 |
Target: 5'- cGGCCAACagcgcaUCCGcccggaccgucAGgGCGUGGAGCa -3' miRNA: 3'- aCUGGUUGag----AGGU-----------UCgCGCGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 9525 | 0.66 | 0.701503 |
Target: 5'- cGGCCucgAGCUCgUCCAugAGCGC-CGGcACg -3' miRNA: 3'- aCUGG---UUGAG-AGGU--UCGCGcGCCuUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 35924 | 0.66 | 0.690463 |
Target: 5'- gGACCAACgacCUCgucuaCGAGCGCcuggcgcCGGAGCu -3' miRNA: 3'- aCUGGUUGa--GAG-----GUUCGCGc------GCCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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