Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11587 | 5' | -54.7 | NC_003085.1 | + | 23633 | 0.67 | 0.612186 |
Target: 5'- aGGCCAGgUuCUCCAccucCGCGCGGGu- -3' miRNA: 3'- aCUGGUUgA-GAGGUuc--GCGCGCCUug -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 13451 | 0.71 | 0.39299 |
Target: 5'- aUGGCCGccaUCcgCCAAGCuGuCGCGGAGCg -3' miRNA: 3'- -ACUGGUug-AGa-GGUUCG-C-GCGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 7847 | 0.73 | 0.307867 |
Target: 5'- gGGCCAugUUcgaggagAAGCGCGCGGAACu -3' miRNA: 3'- aCUGGUugAGagg----UUCGCGCGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 20761 | 0.68 | 0.600992 |
Target: 5'- gGGCCAGCgcgcagCUCCGcGCGUuguccGCGGGGa -3' miRNA: 3'- aCUGGUUGa-----GAGGUuCGCG-----CGCCUUg -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 8481 | 0.69 | 0.50253 |
Target: 5'- gGGCCAGCcCUUgccgcuugCGAGCGCugGCGGGGCc -3' miRNA: 3'- aCUGGUUGaGAG--------GUUCGCG--CGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 39710 | 0.72 | 0.365906 |
Target: 5'- -aGCUcGCUUUCCAAGCGCGCccuGGACu -3' miRNA: 3'- acUGGuUGAGAGGUUCGCGCGc--CUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 37813 | 0.67 | 0.634617 |
Target: 5'- cGGCCAcccggcgcaauGCcCUCCGcGCGCGCuGGuAGCa -3' miRNA: 3'- aCUGGU-----------UGaGAGGUuCGCGCG-CC-UUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 44329 | 0.68 | 0.567614 |
Target: 5'- cGGCCucCUCUUCGGGCGUagccuucgcccGCGGcGACg -3' miRNA: 3'- aCUGGuuGAGAGGUUCGCG-----------CGCC-UUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 27337 | 0.66 | 0.716839 |
Target: 5'- cGGCCAACaucgUCUUCGucgccgucuucaaacAGCGCGUcuggcugguGGAACg -3' miRNA: 3'- aCUGGUUG----AGAGGU---------------UCGCGCG---------CCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 21882 | 0.73 | 0.31571 |
Target: 5'- aGGCCGugUCccUCCAggacuucgcGGCGCuGCGGAAUg -3' miRNA: 3'- aCUGGUugAG--AGGU---------UCGCG-CGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 47535 | 0.69 | 0.534723 |
Target: 5'- gGACCGACgagC-CCGcgagcgaugcgcAGCGCGCuGAACg -3' miRNA: 3'- aCUGGUUGa--GaGGU------------UCGCGCGcCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 12637 | 0.69 | 0.50253 |
Target: 5'- cUGACaauCUCgcugCCucgcugaaGAGCGUGCGGGACg -3' miRNA: 3'- -ACUGguuGAGa---GG--------UUCGCGCGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 25963 | 0.67 | 0.657039 |
Target: 5'- -uGCCGAggggaaugccCcCUCCGAGCaacuccGCGCGGAGCu -3' miRNA: 3'- acUGGUU----------GaGAGGUUCG------CGCGCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 21409 | 0.72 | 0.37479 |
Target: 5'- cGGCCGccuGCUgUCCGAGgcCGCGCaGAACg -3' miRNA: 3'- aCUGGU---UGAgAGGUUC--GCGCGcCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 38911 | 0.67 | 0.657039 |
Target: 5'- -cGCCGACUCUCgCAAG-GCGgGGuuGCc -3' miRNA: 3'- acUGGUUGAGAG-GUUCgCGCgCCu-UG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 43643 | 0.66 | 0.701503 |
Target: 5'- aGGCCAuccGC-CUCCAgcAGCcCGgGGGGCg -3' miRNA: 3'- aCUGGU---UGaGAGGU--UCGcGCgCCUUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 14804 | 0.66 | 0.701503 |
Target: 5'- aGGCCGACaucCUCCGcgaGGCcauCGCGGAGu -3' miRNA: 3'- aCUGGUUGa--GAGGU---UCGc--GCGCCUUg -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 32939 | 0.72 | 0.365906 |
Target: 5'- cGACCGGCUCaaCAGGCGCGCcu-GCc -3' miRNA: 3'- aCUGGUUGAGagGUUCGCGCGccuUG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 5252 | 0.66 | 0.712473 |
Target: 5'- gGuuCGACgCUgCGGGCGCGCGGcaguACg -3' miRNA: 3'- aCugGUUGaGAgGUUCGCGCGCCu---UG- -5' |
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11587 | 5' | -54.7 | NC_003085.1 | + | 24326 | 0.69 | 0.491985 |
Target: 5'- aUGGCCAACgacaUCUCCGcGGCgcucuacgGCGaCGGGACg -3' miRNA: 3'- -ACUGGUUG----AGAGGU-UCG--------CGC-GCCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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