miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11587 5' -54.7 NC_003085.1 + 24326 0.69 0.491985
Target:  5'- aUGGCCAACgacaUCUCCGcGGCgcucuacgGCGaCGGGACg -3'
miRNA:   3'- -ACUGGUUG----AGAGGU-UCG--------CGC-GCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 12637 0.69 0.50253
Target:  5'- cUGACaauCUCgcugCCucgcugaaGAGCGUGCGGGACg -3'
miRNA:   3'- -ACUGguuGAGa---GG--------UUCGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 47535 0.69 0.534723
Target:  5'- gGACCGACgagC-CCGcgagcgaugcgcAGCGCGCuGAACg -3'
miRNA:   3'- aCUGGUUGa--GaGGU------------UCGCGCGcCUUG- -5'
11587 5' -54.7 NC_003085.1 + 27337 0.66 0.716839
Target:  5'- cGGCCAACaucgUCUUCGucgccgucuucaaacAGCGCGUcuggcugguGGAACg -3'
miRNA:   3'- aCUGGUUG----AGAGGU---------------UCGCGCG---------CCUUG- -5'
11587 5' -54.7 NC_003085.1 + 14804 0.66 0.701503
Target:  5'- aGGCCGACaucCUCCGcgaGGCcauCGCGGAGu -3'
miRNA:   3'- aCUGGUUGa--GAGGU---UCGc--GCGCCUUg -5'
11587 5' -54.7 NC_003085.1 + 43643 0.66 0.701503
Target:  5'- aGGCCAuccGC-CUCCAgcAGCcCGgGGGGCg -3'
miRNA:   3'- aCUGGU---UGaGAGGU--UCGcGCgCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 38911 0.67 0.657039
Target:  5'- -cGCCGACUCUCgCAAG-GCGgGGuuGCc -3'
miRNA:   3'- acUGGUUGAGAG-GUUCgCGCgCCu-UG- -5'
11587 5' -54.7 NC_003085.1 + 25963 0.67 0.657039
Target:  5'- -uGCCGAggggaaugccCcCUCCGAGCaacuccGCGCGGAGCu -3'
miRNA:   3'- acUGGUU----------GaGAGGUUCG------CGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 31156 0.67 0.6548
Target:  5'- cGGCCAAUcagUUCCAGGCGauaaaggguaggGCGGAAg -3'
miRNA:   3'- aCUGGUUGa--GAGGUUCGCg-----------CGCCUUg -5'
11587 5' -54.7 NC_003085.1 + 27592 0.67 0.64247
Target:  5'- cGGCCAGUUCggCCAccuucggccugcgcGGUGUGUGGAGCc -3'
miRNA:   3'- aCUGGUUGAGa-GGU--------------UCGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 20334 0.67 0.657039
Target:  5'- gGAUgAACUCUgggCCAcggcgccucAGCGCG-GGAGCg -3'
miRNA:   3'- aCUGgUUGAGA---GGU---------UCGCGCgCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 12585 0.67 0.623397
Target:  5'- gGACCGcuGCUCguggUCCGAcugacGCGCGUGGcGCc -3'
miRNA:   3'- aCUGGU--UGAG----AGGUU-----CGCGCGCCuUG- -5'
11587 5' -54.7 NC_003085.1 + 48240 0.68 0.600992
Target:  5'- --uCCAACUcCUCC-AGCaGCGCGGcGCc -3'
miRNA:   3'- acuGGUUGA-GAGGuUCG-CGCGCCuUG- -5'
11587 5' -54.7 NC_003085.1 + 36244 0.68 0.600992
Target:  5'- cUGGCC-AUUCgguaUUCGAGCGCGUGGGc- -3'
miRNA:   3'- -ACUGGuUGAG----AGGUUCGCGCGCCUug -5'
11587 5' -54.7 NC_003085.1 + 8591 0.68 0.545619
Target:  5'- -cGCCG--UCgUCCGAGCGCGUGGuGACg -3'
miRNA:   3'- acUGGUugAG-AGGUUCGCGCGCC-UUG- -5'
11587 5' -54.7 NC_003085.1 + 32265 1.09 0.00085
Target:  5'- cUGACCAACUCUCCAAGCGCGCGGAACu -3'
miRNA:   3'- -ACUGGUUGAGAGGUUCGCGCGCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.