miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11587 5' -54.7 NC_003085.1 + 27592 0.67 0.64247
Target:  5'- cGGCCAGUUCggCCAccuucggccugcgcGGUGUGUGGAGCc -3'
miRNA:   3'- aCUGGUUGAGa-GGU--------------UCGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 37813 0.67 0.634617
Target:  5'- cGGCCAcccggcgcaauGCcCUCCGcGCGCGCuGGuAGCa -3'
miRNA:   3'- aCUGGU-----------UGaGAGGUuCGCGCG-CC-UUG- -5'
11587 5' -54.7 NC_003085.1 + 44827 0.67 0.634617
Target:  5'- -cACCGACUCUcCCGAGUGa-CGGGAg -3'
miRNA:   3'- acUGGUUGAGA-GGUUCGCgcGCCUUg -5'
11587 5' -54.7 NC_003085.1 + 12585 0.67 0.623397
Target:  5'- gGACCGcuGCUCguggUCCGAcugacGCGCGUGGcGCc -3'
miRNA:   3'- aCUGGU--UGAG----AGGUU-----CGCGCGCCuUG- -5'
11587 5' -54.7 NC_003085.1 + 9081 0.67 0.623397
Target:  5'- cGGCCAGCg--CCAgaggcgucAGCGCcGCGGGcaGCa -3'
miRNA:   3'- aCUGGUUGagaGGU--------UCGCG-CGCCU--UG- -5'
11587 5' -54.7 NC_003085.1 + 23633 0.67 0.612186
Target:  5'- aGGCCAGgUuCUCCAccucCGCGCGGGu- -3'
miRNA:   3'- aCUGGUUgA-GAGGUuc--GCGCGCCUug -5'
11587 5' -54.7 NC_003085.1 + 20761 0.68 0.600992
Target:  5'- gGGCCAGCgcgcagCUCCGcGCGUuguccGCGGGGa -3'
miRNA:   3'- aCUGGUUGa-----GAGGUuCGCG-----CGCCUUg -5'
11587 5' -54.7 NC_003085.1 + 48240 0.68 0.600992
Target:  5'- --uCCAACUcCUCC-AGCaGCGCGGcGCc -3'
miRNA:   3'- acuGGUUGA-GAGGuUCG-CGCGCCuUG- -5'
11587 5' -54.7 NC_003085.1 + 36244 0.68 0.600992
Target:  5'- cUGGCC-AUUCgguaUUCGAGCGCGUGGGc- -3'
miRNA:   3'- -ACUGGuUGAG----AGGUUCGCGCGCCUug -5'
11587 5' -54.7 NC_003085.1 + 44329 0.68 0.567614
Target:  5'- cGGCCucCUCUUCGGGCGUagccuucgcccGCGGcGACg -3'
miRNA:   3'- aCUGGuuGAGAGGUUCGCG-----------CGCC-UUG- -5'
11587 5' -54.7 NC_003085.1 + 8591 0.68 0.545619
Target:  5'- -cGCCG--UCgUCCGAGCGCGUGGuGACg -3'
miRNA:   3'- acUGGUugAG-AGGUUCGCGCGCC-UUG- -5'
11587 5' -54.7 NC_003085.1 + 47535 0.69 0.534723
Target:  5'- gGACCGACgagC-CCGcgagcgaugcgcAGCGCGCuGAACg -3'
miRNA:   3'- aCUGGUUGa--GaGGU------------UCGCGCGcCUUG- -5'
11587 5' -54.7 NC_003085.1 + 36638 0.69 0.523905
Target:  5'- cGGCCAACagcgcaUCCGcccggaccgucAGgGCGUGGAGCa -3'
miRNA:   3'- aCUGGUUGag----AGGU-----------UCgCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 8481 0.69 0.50253
Target:  5'- gGGCCAGCcCUUgccgcuugCGAGCGCugGCGGGGCc -3'
miRNA:   3'- aCUGGUUGaGAG--------GUUCGCG--CGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 12637 0.69 0.50253
Target:  5'- cUGACaauCUCgcugCCucgcugaaGAGCGUGCGGGACg -3'
miRNA:   3'- -ACUGguuGAGa---GG--------UUCGCGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 24326 0.69 0.491985
Target:  5'- aUGGCCAACgacaUCUCCGcGGCgcucuacgGCGaCGGGACg -3'
miRNA:   3'- -ACUGGUUG----AGAGGU-UCG--------CGC-GCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 11623 0.7 0.471212
Target:  5'- cUGugCAgggGCUgCUaCCAGcGCGCGCGGAGg -3'
miRNA:   3'- -ACugGU---UGA-GA-GGUU-CGCGCGCCUUg -5'
11587 5' -54.7 NC_003085.1 + 4708 0.7 0.460993
Target:  5'- gGACUAcCUCaCCgAAGCgaGCGCGGAACu -3'
miRNA:   3'- aCUGGUuGAGaGG-UUCG--CGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 10616 0.7 0.450892
Target:  5'- aUGGCCAAUgcacCUCC-GGCuGUGUGGGGCg -3'
miRNA:   3'- -ACUGGUUGa---GAGGuUCG-CGCGCCUUG- -5'
11587 5' -54.7 NC_003085.1 + 29004 0.7 0.440915
Target:  5'- -uGCCAcUUCUCCAGcggcucGCGCGCGGcgGACa -3'
miRNA:   3'- acUGGUuGAGAGGUU------CGCGCGCC--UUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.