miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11588 3' -59.7 NC_003085.1 + 15360 0.66 0.488741
Target:  5'- ---cGGGCCagcaugacgcGGGCGCggcgggugagcucggCCGCGGCCUCc -3'
miRNA:   3'- gcaaCCUGG----------CUUGCG---------------GGCGCCGGAGu -5'
11588 3' -59.7 NC_003085.1 + 22606 0.66 0.484756
Target:  5'- cCGUUGGccugcauguACCGcGGCGCUucgUGCGGCUUCc -3'
miRNA:   3'- -GCAACC---------UGGC-UUGCGG---GCGCCGGAGu -5'
11588 3' -59.7 NC_003085.1 + 2444 0.66 0.465074
Target:  5'- ---cGaGAgCucGCGCgCCGCGGCCUCGc -3'
miRNA:   3'- gcaaC-CUgGcuUGCG-GGCGCCGGAGU- -5'
11588 3' -59.7 NC_003085.1 + 43919 0.66 0.45539
Target:  5'- uGUUGGAggaggaGAACGCCCGCcugcgcGaCCUCAa -3'
miRNA:   3'- gCAACCUgg----CUUGCGGGCGc-----C-GGAGU- -5'
11588 3' -59.7 NC_003085.1 + 29547 0.66 0.45539
Target:  5'- aGUaGGACUGuacGCGCCCGCGuuguugaaGCCgggCAu -3'
miRNA:   3'- gCAaCCUGGCu--UGCGGGCGC--------CGGa--GU- -5'
11588 3' -59.7 NC_003085.1 + 40878 0.66 0.45539
Target:  5'- ---cGGcCgGGACGCgCGUGGCCUUg -3'
miRNA:   3'- gcaaCCuGgCUUGCGgGCGCCGGAGu -5'
11588 3' -59.7 NC_003085.1 + 1048 0.66 0.445816
Target:  5'- ---aGGcGCCGAACuGCCCGCGuGgCUCc -3'
miRNA:   3'- gcaaCC-UGGCUUG-CGGGCGC-CgGAGu -5'
11588 3' -59.7 NC_003085.1 + 16802 0.67 0.427011
Target:  5'- uGUUGuGugCGGAgGCCCGCagacGGUCgUCAa -3'
miRNA:   3'- gCAAC-CugGCUUgCGGGCG----CCGG-AGU- -5'
11588 3' -59.7 NC_003085.1 + 7858 0.67 0.417787
Target:  5'- uGUUGGGCCGcgaauGCGCUCGCcGCgaCGa -3'
miRNA:   3'- gCAACCUGGCu----UGCGGGCGcCGgaGU- -5'
11588 3' -59.7 NC_003085.1 + 41269 0.68 0.381272
Target:  5'- --cUGGACUGGcgggccaugcacaGCGCCCaGCGGCUcuUCGa -3'
miRNA:   3'- gcaACCUGGCU-------------UGCGGG-CGCCGG--AGU- -5'
11588 3' -59.7 NC_003085.1 + 23029 0.68 0.371843
Target:  5'- --cUGGGCCGGcucguccggcuuCGCCgucgccgucgaCGCGGCCUCGg -3'
miRNA:   3'- gcaACCUGGCUu-----------GCGG-----------GCGCCGGAGU- -5'
11588 3' -59.7 NC_003085.1 + 21693 0.68 0.356762
Target:  5'- ---aGGACgaGGugGCCCGCuucGCCUCGg -3'
miRNA:   3'- gcaaCCUGg-CUugCGGGCGc--CGGAGU- -5'
11588 3' -59.7 NC_003085.1 + 3929 0.68 0.347759
Target:  5'- --cUGGaaGCCGAGCGCCgcggcgauguuguCGCGGCC-CGg -3'
miRNA:   3'- gcaACC--UGGCUUGCGG-------------GCGCCGGaGU- -5'
11588 3' -59.7 NC_003085.1 + 4245 0.68 0.340515
Target:  5'- ---cGGGCCGcAGCGCuUCGCgcgcuuGGCCUCAa -3'
miRNA:   3'- gcaaCCUGGC-UUGCG-GGCG------CCGGAGU- -5'
11588 3' -59.7 NC_003085.1 + 49015 0.68 0.340515
Target:  5'- ---cGGACCGGAUGCgCGCuGcCCUCGc -3'
miRNA:   3'- gcaaCCUGGCUUGCGgGCGcC-GGAGU- -5'
11588 3' -59.7 NC_003085.1 + 41212 0.69 0.332595
Target:  5'- gCGUUGGACUGcucuggcacgguGACGU--GCGGCCUCu -3'
miRNA:   3'- -GCAACCUGGC------------UUGCGggCGCCGGAGu -5'
11588 3' -59.7 NC_003085.1 + 2240 0.69 0.317162
Target:  5'- cCGcUGGugCGcAAUGCCUGCccaccggggGGCCUCGu -3'
miRNA:   3'- -GCaACCugGC-UUGCGGGCG---------CCGGAGU- -5'
11588 3' -59.7 NC_003085.1 + 48518 0.69 0.302275
Target:  5'- --gUGG-CCu-AUGCUCGCGGCCUCGc -3'
miRNA:   3'- gcaACCuGGcuUGCGGGCGCCGGAGU- -5'
11588 3' -59.7 NC_003085.1 + 8971 0.69 0.302275
Target:  5'- ---aGGGCCGcg-GCCCGCGGaCUUCAc -3'
miRNA:   3'- gcaaCCUGGCuugCGGGCGCC-GGAGU- -5'
11588 3' -59.7 NC_003085.1 + 14996 0.7 0.280964
Target:  5'- aGUUGGAgCGccacGCGCUgGCGGCCg-- -3'
miRNA:   3'- gCAACCUgGCu---UGCGGgCGCCGGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.