miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11588 5' -55.9 NC_003085.1 + 17163 0.67 0.565983
Target:  5'- cGCUGAGGCgGAcguGGC-CcACCUGACg -3'
miRNA:   3'- -CGGCUCCGgUUcu-UCGaGcUGGACUG- -5'
11588 5' -55.9 NC_003085.1 + 39467 0.67 0.555089
Target:  5'- aGCCugGAGGCgAAGAGGUUgGcGCCgGACu -3'
miRNA:   3'- -CGG--CUCCGgUUCUUCGAgC-UGGaCUG- -5'
11588 5' -55.9 NC_003085.1 + 39492 0.67 0.544256
Target:  5'- cGUCGAGGCgcuCGAGAAGCcggugcgccUCGuCgCUGGCa -3'
miRNA:   3'- -CGGCUCCG---GUUCUUCG---------AGCuG-GACUG- -5'
11588 5' -55.9 NC_003085.1 + 1560 0.67 0.544256
Target:  5'- gGCCGAGGCUGGcGAcggugacgGGCggCGACUUGGg -3'
miRNA:   3'- -CGGCUCCGGUU-CU--------UCGa-GCUGGACUg -5'
11588 5' -55.9 NC_003085.1 + 46585 0.68 0.522807
Target:  5'- aGCaCGAGGCCaAAGAgguggacccagAGCUUGAacaCCUcGACg -3'
miRNA:   3'- -CG-GCUCCGG-UUCU-----------UCGAGCU---GGA-CUG- -5'
11588 5' -55.9 NC_003085.1 + 44077 0.68 0.516435
Target:  5'- cGCCGAGGCCcgagugcgggaguuGGAGGCggacaacgCGGCgUGGg -3'
miRNA:   3'- -CGGCUCCGGu-------------UCUUCGa-------GCUGgACUg -5'
11588 5' -55.9 NC_003085.1 + 8961 0.68 0.512204
Target:  5'- cGCUG-GGCCAAG-GGCcgCGGCCcgcgGACu -3'
miRNA:   3'- -CGGCuCCGGUUCuUCGa-GCUGGa---CUG- -5'
11588 5' -55.9 NC_003085.1 + 13463 0.68 0.512204
Target:  5'- cGUCGcGGUCAucgcGGcgcGGCUCGACCUGGa -3'
miRNA:   3'- -CGGCuCCGGUu---CU---UCGAGCUGGACUg -5'
11588 5' -55.9 NC_003085.1 + 28452 0.68 0.509041
Target:  5'- cGCCGccaGGGCguGGAuugaggcgcucaccGGCUgCGugCUGACg -3'
miRNA:   3'- -CGGC---UCCGguUCU--------------UCGA-GCugGACUG- -5'
11588 5' -55.9 NC_003085.1 + 41660 0.68 0.501691
Target:  5'- aCUGGGGCuUGAGccGUUCGugCUGACu -3'
miRNA:   3'- cGGCUCCG-GUUCuuCGAGCugGACUG- -5'
11588 5' -55.9 NC_003085.1 + 4326 0.68 0.491275
Target:  5'- cUUGAGGCCAAgcgcgcGAAGCgcugCGGCCcGGCu -3'
miRNA:   3'- cGGCUCCGGUU------CUUCGa---GCUGGaCUG- -5'
11588 5' -55.9 NC_003085.1 + 31438 0.68 0.488169
Target:  5'- gGCCGGGGUCGAGcuucuugucggcgcGGGCgggacggcCGGCCUGGg -3'
miRNA:   3'- -CGGCUCCGGUUC--------------UUCGa-------GCUGGACUg -5'
11588 5' -55.9 NC_003085.1 + 24841 0.69 0.47075
Target:  5'- cGCCGAGGCgcAGAuuCUCG-CCUGGg -3'
miRNA:   3'- -CGGCUCCGguUCUucGAGCuGGACUg -5'
11588 5' -55.9 NC_003085.1 + 7538 0.69 0.450669
Target:  5'- cGCgCG-GGCCGAGggGUgugacgUCGACCUuGCc -3'
miRNA:   3'- -CG-GCuCCGGUUCuuCG------AGCUGGAcUG- -5'
11588 5' -55.9 NC_003085.1 + 14712 0.7 0.421457
Target:  5'- gGCCGaAGGCCAgcccgacaGGGAcgUCGugCUGGCg -3'
miRNA:   3'- -CGGC-UCCGGU--------UCUUcgAGCugGACUG- -5'
11588 5' -55.9 NC_003085.1 + 46925 0.7 0.402629
Target:  5'- uCCGAGGCCAA--GGCccaGACgCUGGCg -3'
miRNA:   3'- cGGCUCCGGUUcuUCGag-CUG-GACUG- -5'
11588 5' -55.9 NC_003085.1 + 17409 0.7 0.402629
Target:  5'- cGCCGggaccAGGCCAGGAuguGC-CG-CCUGAUu -3'
miRNA:   3'- -CGGC-----UCCGGUUCUu--CGaGCuGGACUG- -5'
11588 5' -55.9 NC_003085.1 + 23190 0.71 0.357964
Target:  5'- gGCCGAgGGCCAGGAcccugugaaGGCagUGGCCgGGCu -3'
miRNA:   3'- -CGGCU-CCGGUUCU---------UCGa-GCUGGaCUG- -5'
11588 5' -55.9 NC_003085.1 + 31364 0.72 0.316888
Target:  5'- cGCCGA---CAAGAAGCUCGACCccGGCc -3'
miRNA:   3'- -CGGCUccgGUUCUUCGAGCUGGa-CUG- -5'
11588 5' -55.9 NC_003085.1 + 12373 0.73 0.254757
Target:  5'- uGCCGAgaacaacgcuggaagGGCCGGGugcugcuGCUCGACCcGGCg -3'
miRNA:   3'- -CGGCU---------------CCGGUUCuu-----CGAGCUGGaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.