Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11589 | 3' | -62.7 | NC_003085.1 | + | 33212 | 0.92 | 0.003103 |
Target: 5'- cGUUGGCCGAGGCACUcgGCCGGGCUCc -3' miRNA: 3'- -CAACCGGCUCCGUGAcgCGGCCCGAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 40783 | 0.67 | 0.266095 |
Target: 5'- cGUUGGCgGAcGGCACcccgGCGCCcaaGGC-Ca -3' miRNA: 3'- -CAACCGgCU-CCGUGa---CGCGGc--CCGaG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 4105 | 0.67 | 0.266095 |
Target: 5'- ---cGCCGcuggaguuGGGCGCcGCGCUGGGaCUCc -3' miRNA: 3'- caacCGGC--------UCCGUGaCGCGGCCC-GAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 11610 | 0.66 | 0.272773 |
Target: 5'- --cGGCgCGaAGGgGCUGUGCagGGGCUg -3' miRNA: 3'- caaCCG-GC-UCCgUGACGCGg-CCCGAg -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 29424 | 0.66 | 0.286531 |
Target: 5'- -aUGGCgGAGGCucagGCGCUGcaaGGCUUc -3' miRNA: 3'- caACCGgCUCCGuga-CGCGGC---CCGAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 23189 | 0.66 | 0.293612 |
Target: 5'- --aGGCCGAgGGCcaggaccCUGUgaaggcagugGCCGGGCUg -3' miRNA: 3'- caaCCGGCU-CCGu------GACG----------CGGCCCGAg -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 19061 | 0.66 | 0.300829 |
Target: 5'- --cGGCgCGcGGCggaGCagGCGCCGGGCcCg -3' miRNA: 3'- caaCCG-GCuCCG---UGa-CGCGGCCCGaG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 44771 | 0.66 | 0.308183 |
Target: 5'- --aGGUaguccgccgaCGAGGCGCaacucgGCGCCGugaaaGGCUCg -3' miRNA: 3'- caaCCG----------GCUCCGUGa-----CGCGGC-----CCGAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 42191 | 0.66 | 0.315673 |
Target: 5'- ---aGCCucGGCAUgagGCGCUGGGCg- -3' miRNA: 3'- caacCGGcuCCGUGa--CGCGGCCCGag -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 38153 | 0.67 | 0.253138 |
Target: 5'- cGUUGGUgGuGGCGCUcccCGCCGcGGCg- -3' miRNA: 3'- -CAACCGgCuCCGUGAc--GCGGC-CCGag -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 44643 | 0.67 | 0.240703 |
Target: 5'- gGUUGGCUcaGAGuGUcg-GUGCCGGGCUUu -3' miRNA: 3'- -CAACCGG--CUC-CGugaCGCGGCCCGAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 11646 | 0.72 | 0.117902 |
Target: 5'- --cGcGCgGAgGGCAUUGCGCCGGGUg- -3' miRNA: 3'- caaC-CGgCU-CCGUGACGCGGCCCGag -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 22199 | 0.69 | 0.19599 |
Target: 5'- --aGGCCGAGGUgcagggcgaccuGCUGCGCauccaGGCUg -3' miRNA: 3'- caaCCGGCUCCG------------UGACGCGgc---CCGAg -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 20127 | 0.68 | 0.206438 |
Target: 5'- --cGGCCuaGAGGCGCUGCGCa--GCUa -3' miRNA: 3'- caaCCGG--CUCCGUGACGCGgccCGAg -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 26722 | 0.68 | 0.206438 |
Target: 5'- --gGGCgGugacGGCGCgGCGCCGGuGCUg -3' miRNA: 3'- caaCCGgCu---CCGUGaCGCGGCC-CGAg -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 1313 | 0.68 | 0.211841 |
Target: 5'- -gUGGCCGcgaaggcuGGCACUGCGauGGcGCUg -3' miRNA: 3'- caACCGGCu-------CCGUGACGCggCC-CGAg -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 13108 | 0.68 | 0.223012 |
Target: 5'- --cGcGCUGAGGUGCgugaGCG-CGGGCUCu -3' miRNA: 3'- caaC-CGGCUCCGUGa---CGCgGCCCGAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 20835 | 0.68 | 0.223012 |
Target: 5'- -cUGGauGAGGCGaccgGCGCCGaGCUCg -3' miRNA: 3'- caACCggCUCCGUga--CGCGGCcCGAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 42897 | 0.67 | 0.234679 |
Target: 5'- --aGGCCGAGGUcCUGCGCgUGGaUUCc -3' miRNA: 3'- caaCCGGCUCCGuGACGCG-GCCcGAG- -5' |
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11589 | 3' | -62.7 | NC_003085.1 | + | 27343 | 0.71 | 0.131466 |
Target: 5'- --cGGCUGcuGCg--GCGCCGGGCUCu -3' miRNA: 3'- caaCCGGCucCGugaCGCGGCCCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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