miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11590 3' -61.5 NC_003085.1 + 6144 0.66 0.360834
Target:  5'- -aGAGGAGGGCgaCAUGGCGGgaCUGGUGGa -3'
miRNA:   3'- cgCUUCUCCCG--GUGCCGCC--GGUCGUU- -5'
11590 3' -61.5 NC_003085.1 + 24478 0.66 0.360834
Target:  5'- gGUGGAGGacauGGCgGCGGUGGCCAcCAu -3'
miRNA:   3'- -CGCUUCUc---CCGgUGCCGCCGGUcGUu -5'
11590 3' -61.5 NC_003085.1 + 29403 0.66 0.359995
Target:  5'- aGCGGaugucccgcuccaGGAGGGCgCG-GGCGG-CGGCAAu -3'
miRNA:   3'- -CGCU-------------UCUCCCG-GUgCCGCCgGUCGUU- -5'
11590 3' -61.5 NC_003085.1 + 20336 0.66 0.352503
Target:  5'- aUGAAcucuGGGCCACGGCGcCuCAGCGc -3'
miRNA:   3'- cGCUUcu--CCCGGUGCCGCcG-GUCGUu -5'
11590 3' -61.5 NC_003085.1 + 22694 0.66 0.349209
Target:  5'- aGCGGAGAGGugaGUCugagagagucccugGCGGCGGCUgccgagaAGCAc -3'
miRNA:   3'- -CGCUUCUCC---CGG--------------UGCCGCCGG-------UCGUu -5'
11590 3' -61.5 NC_003085.1 + 8842 0.66 0.344309
Target:  5'- aCGAGGAcGGCaGCGGCcGUCAGCAc -3'
miRNA:   3'- cGCUUCUcCCGgUGCCGcCGGUCGUu -5'
11590 3' -61.5 NC_003085.1 + 33265 0.66 0.344309
Target:  5'- gGCGAGGAGcgcGGUCACGGCucaccucgaaCCAGCGc -3'
miRNA:   3'- -CGCUUCUC---CCGGUGCCGcc--------GGUCGUu -5'
11590 3' -61.5 NC_003085.1 + 43072 0.66 0.343497
Target:  5'- cGUGGAGAcacGGCCGaggaagaaacgacCGGCcGCCAGCAGc -3'
miRNA:   3'- -CGCUUCUc--CCGGU-------------GCCGcCGGUCGUU- -5'
11590 3' -61.5 NC_003085.1 + 40968 0.66 0.336253
Target:  5'- cGCGucguacuGGcGGGCCAgcgccuCGGCGGCCuucuGGCGc -3'
miRNA:   3'- -CGCu------UCuCCCGGU------GCCGCCGG----UCGUu -5'
11590 3' -61.5 NC_003085.1 + 30768 0.66 0.328336
Target:  5'- gGCGggGcGGGCCAcugacCGGCGucacccUCAGCAGg -3'
miRNA:   3'- -CGCuuCuCCCGGU-----GCCGCc-----GGUCGUU- -5'
11590 3' -61.5 NC_003085.1 + 31857 0.66 0.328336
Target:  5'- cGCGAcGGAaGG-CACGGCGGagCAGCAGg -3'
miRNA:   3'- -CGCU-UCUcCCgGUGCCGCCg-GUCGUU- -5'
11590 3' -61.5 NC_003085.1 + 28807 0.66 0.327552
Target:  5'- cGCGAGGAGuGCCGCuGGCucaaggaguaGGCCauggggaAGCAAg -3'
miRNA:   3'- -CGCUUCUCcCGGUG-CCG----------CCGG-------UCGUU- -5'
11590 3' -61.5 NC_003085.1 + 39019 0.66 0.319787
Target:  5'- cGCGGAGGaGGCgACGGCaugcgugGGCgAGCGc -3'
miRNA:   3'- -CGCUUCUcCCGgUGCCG-------CCGgUCGUu -5'
11590 3' -61.5 NC_003085.1 + 18521 0.66 0.315194
Target:  5'- cGCGAAGAggugugcGGGCCgAUugcccagaagcacgaGGUGGCgGGCAAg -3'
miRNA:   3'- -CGCUUCU-------CCCGG-UG---------------CCGCCGgUCGUU- -5'
11590 3' -61.5 NC_003085.1 + 9017 0.66 0.312917
Target:  5'- gGCGcuacguAGGGCUggACGGCGGCaGGCAGc -3'
miRNA:   3'- -CGCuuc---UCCCGG--UGCCGCCGgUCGUU- -5'
11590 3' -61.5 NC_003085.1 + 6468 0.66 0.312917
Target:  5'- gGCGAAGAuggacucGGCCGaugaaGUGGCCAGCGu -3'
miRNA:   3'- -CGCUUCUc------CCGGUgc---CGCCGGUCGUu -5'
11590 3' -61.5 NC_003085.1 + 37188 0.67 0.305415
Target:  5'- aCGggGAcGGCCaguuucACGGCG-CCAGCGg -3'
miRNA:   3'- cGCuuCUcCCGG------UGCCGCcGGUCGUu -5'
11590 3' -61.5 NC_003085.1 + 36952 0.67 0.305415
Target:  5'- uCGAcaGGcAGGGCCGCGG-GGCCAuguugGCGc -3'
miRNA:   3'- cGCU--UC-UCCCGGUGCCgCCGGU-----CGUu -5'
11590 3' -61.5 NC_003085.1 + 2348 0.67 0.298053
Target:  5'- uGCGAcauccgGGAGGcgcagugcgagGCCGCGGCGcGCgAGCu- -3'
miRNA:   3'- -CGCU------UCUCC-----------CGGUGCCGC-CGgUCGuu -5'
11590 3' -61.5 NC_003085.1 + 23295 0.67 0.298053
Target:  5'- aGCGGAcgcauacGGGUCcgcgacguCGGUGGCCAGCAGc -3'
miRNA:   3'- -CGCUUcu-----CCCGGu-------GCCGCCGGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.