miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11592 3' -51 NC_003085.1 + 40864 0.66 0.878897
Target:  5'- uGGAGGCCagcguggacaAGGAGGUGGgcaUCCUGCg- -3'
miRNA:   3'- -UCUUCGGg---------UUCUUCAUCa--GGGAUGag -5'
11592 3' -51 NC_003085.1 + 32357 0.66 0.878897
Target:  5'- uAGgcGUCCuuGccGUGGUCCCUGC-Cg -3'
miRNA:   3'- -UCuuCGGGuuCuuCAUCAGGGAUGaG- -5'
11592 3' -51 NC_003085.1 + 40447 0.66 0.878897
Target:  5'- uGGAagAGCCgGgcggacuugaGGAGGUAGUCCuCUAC-Cg -3'
miRNA:   3'- -UCU--UCGGgU----------UCUUCAUCAGG-GAUGaG- -5'
11592 3' -51 NC_003085.1 + 25529 0.66 0.86225
Target:  5'- uGAGcGCCCcucgcuucguGAGGU-GUCCUUGCUCg -3'
miRNA:   3'- uCUU-CGGGuu--------CUUCAuCAGGGAUGAG- -5'
11592 3' -51 NC_003085.1 + 32263 0.66 0.853523
Target:  5'- ---cGCCCAGGccucGGUGG-CCCgggACUCg -3'
miRNA:   3'- ucuuCGGGUUCu---UCAUCaGGGa--UGAG- -5'
11592 3' -51 NC_003085.1 + 25616 0.68 0.79614
Target:  5'- uGGggGCUCAGGAagcgAGUGGg-CCgagGCUCu -3'
miRNA:   3'- -UCuuCGGGUUCU----UCAUCagGGa--UGAG- -5'
11592 3' -51 NC_003085.1 + 241 0.68 0.785844
Target:  5'- gAGgcGCCuCGAGAAGUGGaggaacccUCCCccuCUCa -3'
miRNA:   3'- -UCuuCGG-GUUCUUCAUC--------AGGGau-GAG- -5'
11592 3' -51 NC_003085.1 + 2954 0.69 0.720807
Target:  5'- cGAGGCCaAAGAGGUGGaCCCagaGCUUg -3'
miRNA:   3'- uCUUCGGgUUCUUCAUCaGGGa--UGAG- -5'
11592 3' -51 NC_003085.1 + 21873 0.69 0.698206
Target:  5'- uGAAGCCCGAGGccguGUCCCUccaggACUUc -3'
miRNA:   3'- uCUUCGGGUUCUucauCAGGGA-----UGAG- -5'
11592 3' -51 NC_003085.1 + 48113 0.72 0.548742
Target:  5'- -aGAGCCCAggcGGAAGccGUCCgUACUCc -3'
miRNA:   3'- ucUUCGGGU---UCUUCauCAGGgAUGAG- -5'
11592 3' -51 NC_003085.1 + 43008 0.82 0.147698
Target:  5'- aAGGAGCCCAGGAguacgGGUucaAGUCCCgUACUCc -3'
miRNA:   3'- -UCUUCGGGUUCU-----UCA---UCAGGG-AUGAG- -5'
11592 3' -51 NC_003085.1 + 35029 1.09 0.001947
Target:  5'- aAGAAGCCCAAGAAGUAGUCCCUACUCc -3'
miRNA:   3'- -UCUUCGGGUUCUUCAUCAGGGAUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.