miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11592 5' -59.8 NC_003085.1 + 41025 0.66 0.462874
Target:  5'- uGGGcGUcgcuggcguccuccUGGGcGgCUUGGCGGG-CUGCu -3'
miRNA:   3'- -CCCuCA--------------ACCC-CgGGAUCGCCCaGACG- -5'
11592 5' -59.8 NC_003085.1 + 3917 0.66 0.436962
Target:  5'- aGGAGUUGacacgccaGGCUCgcgucGCGGGcCUGCa -3'
miRNA:   3'- cCCUCAACc-------CCGGGau---CGCCCaGACG- -5'
11592 5' -59.8 NC_003085.1 + 26084 0.67 0.382516
Target:  5'- aGGAGUugguUGGGGUCgaAGUgcuGGGgCUGCg -3'
miRNA:   3'- cCCUCA----ACCCCGGgaUCG---CCCaGACG- -5'
11592 5' -59.8 NC_003085.1 + 11439 0.68 0.365397
Target:  5'- gGGGAagcggucgccGUUGGGGCCgacGCGGuGUgaGCg -3'
miRNA:   3'- -CCCU----------CAACCCCGGgauCGCC-CAgaCG- -5'
11592 5' -59.8 NC_003085.1 + 15073 0.68 0.357039
Target:  5'- uGGGAGUU--GGCCCUGGaggaGGGaCgGCg -3'
miRNA:   3'- -CCCUCAAccCCGGGAUCg---CCCaGaCG- -5'
11592 5' -59.8 NC_003085.1 + 26650 0.68 0.352088
Target:  5'- cGGAGUcGGGGCCgUcgccuccugGGCGGGagcggccguugccgCUGCc -3'
miRNA:   3'- cCCUCAaCCCCGGgA---------UCGCCCa-------------GACG- -5'
11592 5' -59.8 NC_003085.1 + 16703 0.68 0.324962
Target:  5'- cGGGGGcUUGGGGCUUgcGaCGGGUUUcaaGCc -3'
miRNA:   3'- -CCCUC-AACCCCGGGauC-GCCCAGA---CG- -5'
11592 5' -59.8 NC_003085.1 + 35064 1.12 0.000204
Target:  5'- uGGGAGUUGGGGCCCUAGCGGGUCUGCc -3'
miRNA:   3'- -CCCUCAACCCCGGGAUCGCCCAGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.