miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11593 3' -60.2 NC_003085.1 + 3242 0.76 0.089328
Target:  5'- cUGGGCCGGCccacacacucGCC-CGcCAUGAGCGGg -3'
miRNA:   3'- -ACCCGGCCGa---------CGGcGUuGUACUCGCC- -5'
11593 3' -60.2 NC_003085.1 + 5558 0.68 0.332959
Target:  5'- aGGGCCuGGC-GCCGCGAacgGuGCGc -3'
miRNA:   3'- aCCCGG-CCGaCGGCGUUguaCuCGCc -5'
11593 3' -60.2 NC_003085.1 + 6314 0.66 0.400616
Target:  5'- -aGGCCGaGCggGaaccgCGCAGCAUGGGCGc -3'
miRNA:   3'- acCCGGC-CGa-Cg----GCGUUGUACUCGCc -5'
11593 3' -60.2 NC_003085.1 + 6615 0.68 0.317409
Target:  5'- aUGGGgguccucaaguCCGGC-GCCG-GACGUGAGCGc -3'
miRNA:   3'- -ACCC-----------GGCCGaCGGCgUUGUACUCGCc -5'
11593 3' -60.2 NC_003085.1 + 6743 0.68 0.332959
Target:  5'- aUGGuccgacugcCCGGcCUGCCGCGcCGUG-GCGGa -3'
miRNA:   3'- -ACCc--------GGCC-GACGGCGUuGUACuCGCC- -5'
11593 3' -60.2 NC_003085.1 + 7975 0.67 0.382899
Target:  5'- cGGGCCGGUa---GCAGCGcUGGcGCGGu -3'
miRNA:   3'- aCCCGGCCGacggCGUUGU-ACU-CGCC- -5'
11593 3' -60.2 NC_003085.1 + 8067 0.71 0.196558
Target:  5'- cGaGUCaGGCaugGCCGguACAUGAGCGGa -3'
miRNA:   3'- aCcCGG-CCGa--CGGCguUGUACUCGCC- -5'
11593 3' -60.2 NC_003085.1 + 8479 0.69 0.280951
Target:  5'- cUGGGCCaGCccuUGCCGCuugcgAGCGcuGGCGGg -3'
miRNA:   3'- -ACCCGGcCG---ACGGCG-----UUGUacUCGCC- -5'
11593 3' -60.2 NC_003085.1 + 8813 0.67 0.349061
Target:  5'- cUGGGacugaGGCUGCCGaGACAUGGcuGCGc -3'
miRNA:   3'- -ACCCgg---CCGACGGCgUUGUACU--CGCc -5'
11593 3' -60.2 NC_003085.1 + 11682 0.71 0.207099
Target:  5'- gGGGCUGugaGUUGCCGCuaccaguuCAUGGGCGa -3'
miRNA:   3'- aCCCGGC---CGACGGCGuu------GUACUCGCc -5'
11593 3' -60.2 NC_003085.1 + 11816 0.66 0.437573
Target:  5'- --cGCCGGgUGCCcCGACGcUGAGgCGGa -3'
miRNA:   3'- accCGGCCgACGGcGUUGU-ACUC-GCC- -5'
11593 3' -60.2 NC_003085.1 + 12392 0.73 0.135163
Target:  5'- aGGGCCGGgUGCUGCuGCucgacccGGCGGg -3'
miRNA:   3'- aCCCGGCCgACGGCGuUGuac----UCGCC- -5'
11593 3' -60.2 NC_003085.1 + 13539 0.69 0.285848
Target:  5'- aGGGCaucuuccgccugcgCGGCUgGCCGUGGCAUGGcccugggacuccGCGGc -3'
miRNA:   3'- aCCCG--------------GCCGA-CGGCGUUGUACU------------CGCC- -5'
11593 3' -60.2 NC_003085.1 + 14353 0.66 0.391692
Target:  5'- gGGGCCGGacCUGCCacuCAACG-GGGUGa -3'
miRNA:   3'- aCCCGGCC--GACGGc--GUUGUaCUCGCc -5'
11593 3' -60.2 NC_003085.1 + 14372 0.67 0.349061
Target:  5'- aGcGGCUGGCUG-CGCGG-AUGAGgGGc -3'
miRNA:   3'- aC-CCGGCCGACgGCGUUgUACUCgCC- -5'
11593 3' -60.2 NC_003085.1 + 15034 0.75 0.099862
Target:  5'- cUGGGCCGGCccaaGCCGCAGCccaGGGCc- -3'
miRNA:   3'- -ACCCGGCCGa---CGGCGUUGua-CUCGcc -5'
11593 3' -60.2 NC_003085.1 + 15625 0.7 0.218126
Target:  5'- gUGGGCCGGUgGCCG-GGCGgaGAGCGu -3'
miRNA:   3'- -ACCCGGCCGaCGGCgUUGUa-CUCGCc -5'
11593 3' -60.2 NC_003085.1 + 15946 0.66 0.441376
Target:  5'- -aGGCuCGGCUgguggcgcucccuugGCCGCugggagguggGGCGUGAGCGu -3'
miRNA:   3'- acCCG-GCCGA---------------CGGCG----------UUGUACUCGCc -5'
11593 3' -60.2 NC_003085.1 + 19394 0.66 0.437573
Target:  5'- gUGGGCCGGUacCC-CAGCAaggcccaGGGCGGc -3'
miRNA:   3'- -ACCCGGCCGacGGcGUUGUa------CUCGCC- -5'
11593 3' -60.2 NC_003085.1 + 20343 0.71 0.201768
Target:  5'- cUGGGCCacGGC-GCCuCAGCGcggGAGCGGc -3'
miRNA:   3'- -ACCCGG--CCGaCGGcGUUGUa--CUCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.