Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11593 | 3' | -60.2 | NC_003085.1 | + | 13539 | 0.69 | 0.285848 |
Target: 5'- aGGGCaucuuccgccugcgCGGCUgGCCGUGGCAUGGcccugggacuccGCGGc -3' miRNA: 3'- aCCCG--------------GCCGA-CGGCGUUGUACU------------CGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 8479 | 0.69 | 0.280951 |
Target: 5'- cUGGGCCaGCccuUGCCGCuugcgAGCGcuGGCGGg -3' miRNA: 3'- -ACCCGGcCG---ACGGCG-----UUGUacUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 25755 | 0.69 | 0.272033 |
Target: 5'- gGGGCCgucuugacggaggaGGCUGCUGCGcgggcccgcuGCGuggacgccUGGGCGGc -3' miRNA: 3'- aCCCGG--------------CCGACGGCGU----------UGU--------ACUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 31645 | 0.69 | 0.267326 |
Target: 5'- gGGGCC---UGCCGCAcaggcggcACcgGGGCGGg -3' miRNA: 3'- aCCCGGccgACGGCGU--------UGuaCUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 41058 | 0.69 | 0.265328 |
Target: 5'- cGGGCUgcuacgcgacugggGGCUGCCGaugAGC--GAGCGGa -3' miRNA: 3'- aCCCGG--------------CCGACGGCg--UUGuaCUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 26506 | 0.69 | 0.260716 |
Target: 5'- cUGGGCCGGCUcguccggcuucGCCGuCGcCGUcGAcGCGGc -3' miRNA: 3'- -ACCCGGCCGA-----------CGGC-GUuGUA-CU-CGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 25426 | 0.69 | 0.260716 |
Target: 5'- -cGGCaaCGGCUGa-GCAGCAcUGAGCGGc -3' miRNA: 3'- acCCG--GCCGACggCGUUGU-ACUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 35338 | 0.7 | 0.22965 |
Target: 5'- cGGGCagcaCGGUgaUGCCGUGGCAgUGGGCGa -3' miRNA: 3'- aCCCG----GCCG--ACGGCGUUGU-ACUCGCc -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 40895 | 0.7 | 0.223825 |
Target: 5'- cGGcauGCCacGGUUGuuGCGGCggGAGCGGg -3' miRNA: 3'- aCC---CGG--CCGACggCGUUGuaCUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 15625 | 0.7 | 0.218126 |
Target: 5'- gUGGGCCGGUgGCCG-GGCGgaGAGCGu -3' miRNA: 3'- -ACCCGGCCGaCGGCgUUGUa-CUCGCc -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 20834 | 0.7 | 0.218126 |
Target: 5'- gGGGUaucgaaaGGCcgGCCGCAGCAgcGAGCGc -3' miRNA: 3'- aCCCGg------CCGa-CGGCGUUGUa-CUCGCc -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 11682 | 0.71 | 0.207099 |
Target: 5'- gGGGCUGugaGUUGCCGCuaccaguuCAUGGGCGa -3' miRNA: 3'- aCCCGGC---CGACGGCGuu------GUACUCGCc -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 20343 | 0.71 | 0.201768 |
Target: 5'- cUGGGCCacGGC-GCCuCAGCGcggGAGCGGc -3' miRNA: 3'- -ACCCGG--CCGaCGGcGUUGUa--CUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 8067 | 0.71 | 0.196558 |
Target: 5'- cGaGUCaGGCaugGCCGguACAUGAGCGGa -3' miRNA: 3'- aCcCGG-CCGa--CGGCguUGUACUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 24649 | 0.72 | 0.181626 |
Target: 5'- cUGGuugaaaGCCGcGC-GCCGCGACGggcUGAGCGGc -3' miRNA: 3'- -ACC------CGGC-CGaCGGCGUUGU---ACUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 40331 | 0.72 | 0.181625 |
Target: 5'- aGGGCUGGCgcgUGCCuCA--GUGGGCGGu -3' miRNA: 3'- aCCCGGCCG---ACGGcGUugUACUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 35606 | 0.73 | 0.146625 |
Target: 5'- cGGGCgCgGGUUGCCGCAcauccgGCAcuucccUGGGCGGc -3' miRNA: 3'- aCCCG-G-CCGACGGCGU------UGU------ACUCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 12392 | 0.73 | 0.135163 |
Target: 5'- aGGGCCGGgUGCUGCuGCucgacccGGCGGg -3' miRNA: 3'- aCCCGGCCgACGGCGuUGuac----UCGCC- -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 34442 | 0.74 | 0.127986 |
Target: 5'- cGGaGCCGGCgacGUCGgcCAGCAUGAGCGu -3' miRNA: 3'- aCC-CGGCCGa--CGGC--GUUGUACUCGCc -5' |
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11593 | 3' | -60.2 | NC_003085.1 | + | 48364 | 0.75 | 0.11156 |
Target: 5'- cGGGCUcGCUGCCGCGG-AUGGGCaGGu -3' miRNA: 3'- aCCCGGcCGACGGCGUUgUACUCG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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